Gene : Seita.5G146500 S. italica v2.2
Defline:  (1 of 13) 3.5.1.52 - Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase / N-oligosaccharide glycopeptidase Genomic Order:  1465
Name:  ? Seita.5G146500 Secondary Identifier:  ? PAC:32682617
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G146500 0.5kb upstream 0.5kb upstream 2225 true scaffold_5: 12997664-12999888 Setaria italica
Seita.5G146500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12999389-12999888 Setaria italica
Seita.5G146500 0.5kb downstream 0.5kb downstream 2225 true scaffold_5: 12997164-12999388 Setaria italica
Seita.5G146500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12997164-12997663 Setaria italica
Seita.5G146500 1.0kb upstream 1.0kb upstream 2725 true scaffold_5: 12997664-13000388 Setaria italica
Seita.5G146500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12999389-13000388 Setaria italica
Seita.5G146500 1.0kb downstream 1.0kb downstream 2725 true scaffold_5: 12996664-12999388 Setaria italica
Seita.5G146500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12996664-12997663 Setaria italica
Seita.5G146500 2.0kb upstream 2.0kb upstream 3725 true scaffold_5: 12997664-13001388 Setaria italica
Seita.5G146500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12999389-13001388 Setaria italica
Seita.5G146500 2.0kb downstream 2.0kb downstream 3725 true scaffold_5: 12995664-12999388 Setaria italica
Seita.5G146500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12995664-12997663 Setaria italica
Seita.5G146500 5.0kb upstream 5.0kb upstream 6725 true scaffold_5: 12997664-13004388 Setaria italica
Seita.5G146500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12999389-13004388 Setaria italica
Seita.5G146500 5.0kb downstream 5.0kb downstream 6725 true scaffold_5: 12992664-12999388 Setaria italica
Seita.5G146500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12992664-12997663 Setaria italica
Seita.5G146500 10.0kb upstream 10.0kb upstream 11725 true scaffold_5: 12997664-13009388 Setaria italica
Seita.5G146500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12999389-13009388 Setaria italica
Seita.5G146500 10.0kb downstream 10.0kb downstream 11725 true scaffold_5: 12987664-12999388 Setaria italica
Seita.5G146500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12987664-12997663 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197440 5267 Panicoideae View MSA
124574392 5269 Grass View MSA
122047638 5273 Angiosperm View MSA
121344579 5274 Embryophyte View MSA
123380069 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.278        
cufflinks 11.545       High
cufflinks 0.142       Low
cufflinks 0.456       Low
cufflinks 1.579        
cufflinks 11.365       High
cufflinks 8.423       High
cufflinks 4.576        
cufflinks 4.68        
cufflinks 5.471        
cufflinks 4.162        
cufflinks 1.333        
cufflinks 4.499        
cufflinks 0.123     Low Low
cufflinks 1.733        
cufflinks 4.16        
cufflinks 2.464        
cufflinks 1.046        
cufflinks 0.279       Low
cufflinks 3.281        

0 Strain