Gene : Seita.5G148000 S. italica v2.2
Defline:  (1 of 1) PTHR10217//PTHR10217:SF495 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL Genomic Order:  1480
Name:  ? Seita.5G148000 Secondary Identifier:  ? PAC:32685949
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G148000 0.5kb upstream 0.5kb upstream 5771 true scaffold_5: 13172042-13177812 Setaria italica
Seita.5G148000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 13177313-13177812 Setaria italica
Seita.5G148000 0.5kb downstream 0.5kb downstream 5771 true scaffold_5: 13171542-13177312 Setaria italica
Seita.5G148000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 13171542-13172041 Setaria italica
Seita.5G148000 1.0kb upstream 1.0kb upstream 6271 true scaffold_5: 13172042-13178312 Setaria italica
Seita.5G148000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 13177313-13178312 Setaria italica
Seita.5G148000 1.0kb downstream 1.0kb downstream 6271 true scaffold_5: 13171042-13177312 Setaria italica
Seita.5G148000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 13171042-13172041 Setaria italica
Seita.5G148000 2.0kb upstream 2.0kb upstream 7271 true scaffold_5: 13172042-13179312 Setaria italica
Seita.5G148000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 13177313-13179312 Setaria italica
Seita.5G148000 2.0kb downstream 2.0kb downstream 7271 true scaffold_5: 13170042-13177312 Setaria italica
Seita.5G148000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 13170042-13172041 Setaria italica
Seita.5G148000 5.0kb upstream 5.0kb upstream 10271 true scaffold_5: 13172042-13182312 Setaria italica
Seita.5G148000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 13177313-13182312 Setaria italica
Seita.5G148000 5.0kb downstream 5.0kb downstream 10271 true scaffold_5: 13167042-13177312 Setaria italica
Seita.5G148000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 13167042-13172041 Setaria italica
Seita.5G148000 10.0kb upstream 10.0kb upstream 15271 true scaffold_5: 13172042-13187312 Setaria italica
Seita.5G148000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 13177313-13187312 Setaria italica
Seita.5G148000 10.0kb downstream 10.0kb downstream 15271 true scaffold_5: 13162042-13177312 Setaria italica
Seita.5G148000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 13162042-13172041 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191645 5267 Panicoideae View MSA
124586231 5269 Grass View MSA
122043816 5273 Angiosperm View MSA
121310193 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.176        
cufflinks 0.11     Low  
cufflinks 0.467        
cufflinks 0.456        
cufflinks 0.342        
cufflinks 0.076     Low  
cufflinks 0.446        
cufflinks 0.289        
cufflinks 0.159        
cufflinks 0.036     Low  
cufflinks 0.086     Low  
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.469        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.985        
cufflinks 0.001     Low Low
cufflinks 0.814        
cufflinks 0.598        
cufflinks 0.001     Low Low

0 Strain