Gene : Seita.5G154000 S. italica v2.2
Defline:  (1 of 1) PTHR13495 - NEFA-INTERACTING NUCLEAR PROTEIN NIP30 Genomic Order:  1540
Name:  ? Seita.5G154000 Secondary Identifier:  ? PAC:32680751
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G154000 0.5kb upstream 0.5kb upstream 5436 true scaffold_5: 13894081-13899516 Setaria italica
Seita.5G154000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 13894081-13894580 Setaria italica
Seita.5G154000 0.5kb downstream 0.5kb downstream 5436 true scaffold_5: 13894581-13900016 Setaria italica
Seita.5G154000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 13899517-13900016 Setaria italica
Seita.5G154000 1.0kb upstream 1.0kb upstream 5936 true scaffold_5: 13893581-13899516 Setaria italica
Seita.5G154000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 13893581-13894580 Setaria italica
Seita.5G154000 1.0kb downstream 1.0kb downstream 5936 true scaffold_5: 13894581-13900516 Setaria italica
Seita.5G154000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 13899517-13900516 Setaria italica
Seita.5G154000 2.0kb upstream 2.0kb upstream 6936 true scaffold_5: 13892581-13899516 Setaria italica
Seita.5G154000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 13892581-13894580 Setaria italica
Seita.5G154000 2.0kb downstream 2.0kb downstream 6936 true scaffold_5: 13894581-13901516 Setaria italica
Seita.5G154000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 13899517-13901516 Setaria italica
Seita.5G154000 5.0kb upstream 5.0kb upstream 9936 true scaffold_5: 13889581-13899516 Setaria italica
Seita.5G154000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 13889581-13894580 Setaria italica
Seita.5G154000 5.0kb downstream 5.0kb downstream 9936 true scaffold_5: 13894581-13904516 Setaria italica
Seita.5G154000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 13899517-13904516 Setaria italica
Seita.5G154000 10.0kb upstream 10.0kb upstream 14936 true scaffold_5: 13884581-13899516 Setaria italica
Seita.5G154000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 13884581-13894580 Setaria italica
Seita.5G154000 10.0kb downstream 10.0kb downstream 14936 true scaffold_5: 13894581-13909516 Setaria italica
Seita.5G154000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 13899517-13909516 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175281 5267 Panicoideae View MSA
124569896 5269 Grass View MSA
122047119 5273 Angiosperm View MSA
121346332 5274 Embryophyte View MSA
123425229 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.479        
cufflinks 2.935       High
cufflinks 1.403       Low
cufflinks 1.76        
cufflinks 1.529       Low
cufflinks 2.873       High
cufflinks 2.038        
cufflinks 2.863       High
cufflinks 1.867        
cufflinks 2.419        
cufflinks 1.851        
cufflinks 1.995        
cufflinks 2.02        
cufflinks 1.69        
cufflinks 2.317        
cufflinks 2.191        
cufflinks 3.088       High
cufflinks 1.83        
cufflinks 1.509       Low
cufflinks 2.556        

0 Strain