Gene : Seita.5G162200 S. italica v2.2
Defline:  (1 of 2) PTHR10459//PTHR10459:SF64 - DNA LIGASE Genomic Order:  1622
Name:  ? Seita.5G162200 Secondary Identifier:  ? PAC:32681157
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G162200 0.5kb upstream 0.5kb upstream 7493 true scaffold_5: 15554519-15562011 Setaria italica
Seita.5G162200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 15561512-15562011 Setaria italica
Seita.5G162200 0.5kb downstream 0.5kb downstream 7493 true scaffold_5: 15554019-15561511 Setaria italica
Seita.5G162200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 15554019-15554518 Setaria italica
Seita.5G162200 1.0kb upstream 1.0kb upstream 7993 true scaffold_5: 15554519-15562511 Setaria italica
Seita.5G162200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 15561512-15562511 Setaria italica
Seita.5G162200 1.0kb downstream 1.0kb downstream 7993 true scaffold_5: 15553519-15561511 Setaria italica
Seita.5G162200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 15553519-15554518 Setaria italica
Seita.5G162200 2.0kb upstream 2.0kb upstream 8993 true scaffold_5: 15554519-15563511 Setaria italica
Seita.5G162200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 15561512-15563511 Setaria italica
Seita.5G162200 2.0kb downstream 2.0kb downstream 8993 true scaffold_5: 15552519-15561511 Setaria italica
Seita.5G162200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 15552519-15554518 Setaria italica
Seita.5G162200 5.0kb upstream 5.0kb upstream 11993 true scaffold_5: 15554519-15566511 Setaria italica
Seita.5G162200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 15561512-15566511 Setaria italica
Seita.5G162200 5.0kb downstream 5.0kb downstream 11993 true scaffold_5: 15549519-15561511 Setaria italica
Seita.5G162200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 15549519-15554518 Setaria italica
Seita.5G162200 10.0kb upstream 10.0kb upstream 16993 true scaffold_5: 15554519-15571511 Setaria italica
Seita.5G162200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 15561512-15571511 Setaria italica
Seita.5G162200 10.0kb downstream 10.0kb downstream 16993 true scaffold_5: 15544519-15561511 Setaria italica
Seita.5G162200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 15544519-15554518 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178806 5267 Panicoideae View MSA
124578623 5269 Grass View MSA
122051365 5273 Angiosperm View MSA
121345540 5274 Embryophyte View MSA
123380235 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.932        
cufflinks 1.443        
cufflinks 0.03     Low Low
cufflinks 0.015     Low Low
cufflinks 0.05     Low Low
cufflinks 1.691        
cufflinks 0.689        
cufflinks 0.862        
cufflinks 0.589        
cufflinks 0.71        
cufflinks 0.978        
cufflinks 2.796       High
cufflinks 0.52        
cufflinks 0.127     Low  
cufflinks 1.279        
cufflinks 0.35        
cufflinks 1.424        
cufflinks 2.042        
cufflinks 0.068     Low Low
cufflinks 1.77        

0 Strain