Gene : Seita.5G243700 S. italica v2.2
Defline:  (1 of 1) PTHR15316 - SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED Genomic Order:  2437
Name:  ? Seita.5G243700 Secondary Identifier:  ? PAC:32680802
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G243700 0.5kb upstream 0.5kb upstream 5011 true scaffold_5: 30628168-30633178 Setaria italica
Seita.5G243700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30628168-30628667 Setaria italica
Seita.5G243700 0.5kb downstream 0.5kb downstream 5011 true scaffold_5: 30628668-30633678 Setaria italica
Seita.5G243700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30633179-30633678 Setaria italica
Seita.5G243700 1.0kb upstream 1.0kb upstream 5511 true scaffold_5: 30627668-30633178 Setaria italica
Seita.5G243700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30627668-30628667 Setaria italica
Seita.5G243700 1.0kb downstream 1.0kb downstream 5511 true scaffold_5: 30628668-30634178 Setaria italica
Seita.5G243700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30633179-30634178 Setaria italica
Seita.5G243700 2.0kb upstream 2.0kb upstream 6511 true scaffold_5: 30626668-30633178 Setaria italica
Seita.5G243700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30626668-30628667 Setaria italica
Seita.5G243700 2.0kb downstream 2.0kb downstream 6511 true scaffold_5: 30628668-30635178 Setaria italica
Seita.5G243700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30633179-30635178 Setaria italica
Seita.5G243700 5.0kb upstream 5.0kb upstream 9511 true scaffold_5: 30623668-30633178 Setaria italica
Seita.5G243700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30623668-30628667 Setaria italica
Seita.5G243700 5.0kb downstream 5.0kb downstream 9511 true scaffold_5: 30628668-30638178 Setaria italica
Seita.5G243700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30633179-30638178 Setaria italica
Seita.5G243700 10.0kb upstream 10.0kb upstream 14511 true scaffold_5: 30618668-30633178 Setaria italica
Seita.5G243700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30618668-30628667 Setaria italica
Seita.5G243700 10.0kb downstream 10.0kb downstream 14511 true scaffold_5: 30628668-30643178 Setaria italica
Seita.5G243700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30633179-30643178 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041332 5273 Angiosperm View MSA
122175165 5267 Panicoideae View MSA
124589801 5269 Grass View MSA
121344762 5274 Embryophyte View MSA
123425409 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.532     High High
cufflinks 27.782     High High
cufflinks 14.284     High  
cufflinks 10.083       Low
cufflinks 12.994     High  
cufflinks 29.081     High High
cufflinks 17.808     High  
cufflinks 14.269     High  
cufflinks 17.539     High  
cufflinks 17.299     High  
cufflinks 26.639     High High
cufflinks 15.061     High  
cufflinks 11.218       Low
cufflinks 14.04     High  
cufflinks 20.115     High  
cufflinks 18.085     High  
cufflinks 17.201     High  
cufflinks 27.286     High High
cufflinks 11.285     High Low
cufflinks 16.293     High  

0 Strain