Gene : Seita.5G245200 S. italica v2.2
Defline:  (1 of 9) 1.1.1.37 - Malate dehydrogenase / Malic dehydrogenase Genomic Order:  2452
Name:  ? Seita.5G245200 Secondary Identifier:  ? PAC:32683446
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLUCONEO-PWY Setaria italica pathologic  
Sitalica GLYOXYLATE-BYPASS Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-5690 Setaria italica pathologic  
Sitalica PWY-7115 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G245200 0.5kb upstream 0.5kb upstream 3874 true scaffold_5: 30734235-30738108 Setaria italica
Seita.5G245200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30734235-30734734 Setaria italica
Seita.5G245200 0.5kb downstream 0.5kb downstream 3874 true scaffold_5: 30734735-30738608 Setaria italica
Seita.5G245200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30738109-30738608 Setaria italica
Seita.5G245200 1.0kb upstream 1.0kb upstream 4374 true scaffold_5: 30733735-30738108 Setaria italica
Seita.5G245200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30733735-30734734 Setaria italica
Seita.5G245200 1.0kb downstream 1.0kb downstream 4374 true scaffold_5: 30734735-30739108 Setaria italica
Seita.5G245200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30738109-30739108 Setaria italica
Seita.5G245200 2.0kb upstream 2.0kb upstream 5374 true scaffold_5: 30732735-30738108 Setaria italica
Seita.5G245200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30732735-30734734 Setaria italica
Seita.5G245200 2.0kb downstream 2.0kb downstream 5374 true scaffold_5: 30734735-30740108 Setaria italica
Seita.5G245200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30738109-30740108 Setaria italica
Seita.5G245200 5.0kb upstream 5.0kb upstream 8374 true scaffold_5: 30729735-30738108 Setaria italica
Seita.5G245200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30729735-30734734 Setaria italica
Seita.5G245200 5.0kb downstream 5.0kb downstream 8374 true scaffold_5: 30734735-30743108 Setaria italica
Seita.5G245200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30738109-30743108 Setaria italica
Seita.5G245200 10.0kb upstream 10.0kb upstream 13374 true scaffold_5: 30724735-30738108 Setaria italica
Seita.5G245200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30724735-30734734 Setaria italica
Seita.5G245200 10.0kb downstream 10.0kb downstream 13374 true scaffold_5: 30734735-30748108 Setaria italica
Seita.5G245200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30738109-30748108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191155 5267 Panicoideae View MSA
124588108 5269 Grass View MSA
122042635 5273 Angiosperm View MSA
121345492 5274 Embryophyte View MSA
123423974 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.49     High  
cufflinks 45.555     High  
cufflinks 5.397       Low
cufflinks 3.609       Low
cufflinks 5.794       Low
cufflinks 44.529     High  
cufflinks 27.812     High  
cufflinks 56.32     High  
cufflinks 46.558     High  
cufflinks 51.559     High  
cufflinks 39.12     High  
cufflinks 39.085     High  
cufflinks 31.591     High  
cufflinks 11.034        
cufflinks 41.046     High  
cufflinks 6.694       Low
cufflinks 53.381     High  
cufflinks 4.623       Low
cufflinks 5.274       Low
cufflinks 65.794     High High

0 Strain