Gene : Seita.5G247800 S. italica v2.2
Defline:  (1 of 2) 3.4.24.85 - S2P endopeptidase / Sterol-regulatory element-binding proteins intramembrane protease Genomic Order:  2478
Name:  ? Seita.5G247800 Secondary Identifier:  ? PAC:32684666
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G247800 0.5kb upstream 0.5kb upstream 5756 true scaffold_5: 30941552-30947307 Setaria italica
Seita.5G247800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30946808-30947307 Setaria italica
Seita.5G247800 0.5kb downstream 0.5kb downstream 5756 true scaffold_5: 30941052-30946807 Setaria italica
Seita.5G247800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30941052-30941551 Setaria italica
Seita.5G247800 1.0kb upstream 1.0kb upstream 6256 true scaffold_5: 30941552-30947807 Setaria italica
Seita.5G247800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30946808-30947807 Setaria italica
Seita.5G247800 1.0kb downstream 1.0kb downstream 6256 true scaffold_5: 30940552-30946807 Setaria italica
Seita.5G247800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30940552-30941551 Setaria italica
Seita.5G247800 2.0kb upstream 2.0kb upstream 7256 true scaffold_5: 30941552-30948807 Setaria italica
Seita.5G247800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30946808-30948807 Setaria italica
Seita.5G247800 2.0kb downstream 2.0kb downstream 7256 true scaffold_5: 30939552-30946807 Setaria italica
Seita.5G247800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30939552-30941551 Setaria italica
Seita.5G247800 5.0kb upstream 5.0kb upstream 10256 true scaffold_5: 30941552-30951807 Setaria italica
Seita.5G247800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30946808-30951807 Setaria italica
Seita.5G247800 5.0kb downstream 5.0kb downstream 10256 true scaffold_5: 30936552-30946807 Setaria italica
Seita.5G247800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30936552-30941551 Setaria italica
Seita.5G247800 10.0kb upstream 10.0kb upstream 15256 true scaffold_5: 30941552-30956807 Setaria italica
Seita.5G247800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30946808-30956807 Setaria italica
Seita.5G247800 10.0kb downstream 10.0kb downstream 15256 true scaffold_5: 30931552-30946807 Setaria italica
Seita.5G247800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30931552-30941551 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175351 5267 Panicoideae View MSA
124581987 5269 Grass View MSA
122043269 5273 Angiosperm View MSA
121310098 5274 Embryophyte View MSA
123424527 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.658        
cufflinks 0.6        
cufflinks 0.658        
cufflinks 0.742       High
cufflinks 0.437        
cufflinks 0.58        
cufflinks 0.474        
cufflinks 0.53        
cufflinks 0.454        
cufflinks 0.447        
cufflinks 0.527        
cufflinks 0.429        
cufflinks 0.478        
cufflinks 0.482        
cufflinks 0.442        
cufflinks 0.688       High
cufflinks 0.494        
cufflinks 0.987       High
cufflinks 0.593        
cufflinks 0.366       Low

0 Strain