Gene : Seita.5G249600 S. italica v2.2
Defline:  (1 of 1) PTHR33978:SF2 - EXPRESSED PROTEIN Genomic Order:  2496
Name:  ? Seita.5G249600 Secondary Identifier:  ? PAC:32681314
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G249600 0.5kb upstream 0.5kb upstream 851 true scaffold_5: 31121825-31122675 Setaria italica
Seita.5G249600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 31122176-31122675 Setaria italica
Seita.5G249600 0.5kb downstream 0.5kb downstream 851 true scaffold_5: 31121325-31122175 Setaria italica
Seita.5G249600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 31121325-31121824 Setaria italica
Seita.5G249600 1.0kb upstream 1.0kb upstream 1351 true scaffold_5: 31121825-31123175 Setaria italica
Seita.5G249600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 31122176-31123175 Setaria italica
Seita.5G249600 1.0kb downstream 1.0kb downstream 1351 true scaffold_5: 31120825-31122175 Setaria italica
Seita.5G249600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 31120825-31121824 Setaria italica
Seita.5G249600 2.0kb upstream 2.0kb upstream 2351 true scaffold_5: 31121825-31124175 Setaria italica
Seita.5G249600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 31122176-31124175 Setaria italica
Seita.5G249600 2.0kb downstream 2.0kb downstream 2351 true scaffold_5: 31119825-31122175 Setaria italica
Seita.5G249600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 31119825-31121824 Setaria italica
Seita.5G249600 5.0kb upstream 5.0kb upstream 5351 true scaffold_5: 31121825-31127175 Setaria italica
Seita.5G249600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 31122176-31127175 Setaria italica
Seita.5G249600 5.0kb downstream 5.0kb downstream 5351 true scaffold_5: 31116825-31122175 Setaria italica
Seita.5G249600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 31116825-31121824 Setaria italica
Seita.5G249600 10.0kb upstream 10.0kb upstream 10351 true scaffold_5: 31121825-31132175 Setaria italica
Seita.5G249600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 31122176-31132175 Setaria italica
Seita.5G249600 10.0kb downstream 10.0kb downstream 10351 true scaffold_5: 31111825-31122175 Setaria italica
Seita.5G249600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 31111825-31121824 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029230 5273 Angiosperm View MSA
122197129 5267 Panicoideae View MSA
124578874 5269 Grass View MSA
121298592 5274 Embryophyte View MSA
123336555 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.157        
cufflinks 1.098        
cufflinks 0.071     Low Low
cufflinks 0.351        
cufflinks 2.642        
cufflinks 0.309        
cufflinks 7.748       High
cufflinks 3.331       High
cufflinks 6.115       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.062     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.289        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.225        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.436        
cufflinks 0.403        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain