Gene : Seita.5G257300 S. italica v2.2

Defline:  (1 of 2) PTHR13140//PTHR13140:SF435 - MYOSIN Genomic Order:  2573
Name:  ? Seita.5G257300 Secondary Identifier:  ? PAC:32683083

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G257300 0.5kb upstream 0.5kb upstream 5370 true scaffold_5: 31970865-31976234 Setaria italica
Seita.5G257300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 31970865-31971364 Setaria italica
Seita.5G257300 0.5kb downstream 0.5kb downstream 5370 true scaffold_5: 31971365-31976734 Setaria italica
Seita.5G257300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 31976235-31976734 Setaria italica
Seita.5G257300 1.0kb upstream 1.0kb upstream 5870 true scaffold_5: 31970365-31976234 Setaria italica
Seita.5G257300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 31970365-31971364 Setaria italica
Seita.5G257300 1.0kb downstream 1.0kb downstream 5870 true scaffold_5: 31971365-31977234 Setaria italica
Seita.5G257300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 31976235-31977234 Setaria italica
Seita.5G257300 2.0kb upstream 2.0kb upstream 6870 true scaffold_5: 31969365-31976234 Setaria italica
Seita.5G257300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 31969365-31971364 Setaria italica
Seita.5G257300 2.0kb downstream 2.0kb downstream 6870 true scaffold_5: 31971365-31978234 Setaria italica
Seita.5G257300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 31976235-31978234 Setaria italica
Seita.5G257300 5.0kb upstream 5.0kb upstream 9870 true scaffold_5: 31966365-31976234 Setaria italica
Seita.5G257300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 31966365-31971364 Setaria italica
Seita.5G257300 5.0kb downstream 5.0kb downstream 9870 true scaffold_5: 31971365-31981234 Setaria italica
Seita.5G257300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 31976235-31981234 Setaria italica
Seita.5G257300 10.0kb upstream 10.0kb upstream 14870 true scaffold_5: 31961365-31976234 Setaria italica
Seita.5G257300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 31961365-31971364 Setaria italica
Seita.5G257300 10.0kb downstream 10.0kb downstream 14870 true scaffold_5: 31971365-31986234 Setaria italica
Seita.5G257300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 31976235-31986234 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178709 5267 Panicoideae View MSA
124573972 5269 Grass View MSA
122046139 5273 Angiosperm View MSA
121310565 5274 Embryophyte View MSA
123428306 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.778     High High
cufflinks 9.74        
cufflinks 2.455       Low
cufflinks 2.139       Low
cufflinks 2.429       Low
cufflinks 9.913        
cufflinks 10.148        
cufflinks 4.459        
cufflinks 3.541        
cufflinks 8.264        
cufflinks 19.82     High High
cufflinks 8.58        
cufflinks 19.429     High High
cufflinks 2.584       Low
cufflinks 14.153     High  
cufflinks 7.967        
cufflinks 11.569        
cufflinks 3.63        
cufflinks 1.905       Low
cufflinks 12.127        

0 Strain