Gene : Seita.5G267600 S. italica v2.2
Defline:  (1 of 2) PTHR16517//PTHR16517:SF35 - TUBBY-RELATED Genomic Order:  2676
Name:  ? Seita.5G267600 Secondary Identifier:  ? PAC:32685338
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G267600 0.5kb upstream 0.5kb upstream 4274 true scaffold_5: 32937307-32941580 Setaria italica
Seita.5G267600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 32941081-32941580 Setaria italica
Seita.5G267600 0.5kb downstream 0.5kb downstream 4274 true scaffold_5: 32936807-32941080 Setaria italica
Seita.5G267600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 32936807-32937306 Setaria italica
Seita.5G267600 1.0kb upstream 1.0kb upstream 4774 true scaffold_5: 32937307-32942080 Setaria italica
Seita.5G267600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 32941081-32942080 Setaria italica
Seita.5G267600 1.0kb downstream 1.0kb downstream 4774 true scaffold_5: 32936307-32941080 Setaria italica
Seita.5G267600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 32936307-32937306 Setaria italica
Seita.5G267600 2.0kb upstream 2.0kb upstream 5774 true scaffold_5: 32937307-32943080 Setaria italica
Seita.5G267600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 32941081-32943080 Setaria italica
Seita.5G267600 2.0kb downstream 2.0kb downstream 5774 true scaffold_5: 32935307-32941080 Setaria italica
Seita.5G267600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 32935307-32937306 Setaria italica
Seita.5G267600 5.0kb upstream 5.0kb upstream 8774 true scaffold_5: 32937307-32946080 Setaria italica
Seita.5G267600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 32941081-32946080 Setaria italica
Seita.5G267600 5.0kb downstream 5.0kb downstream 8774 true scaffold_5: 32932307-32941080 Setaria italica
Seita.5G267600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 32932307-32937306 Setaria italica
Seita.5G267600 10.0kb upstream 10.0kb upstream 13774 true scaffold_5: 32937307-32951080 Setaria italica
Seita.5G267600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 32941081-32951080 Setaria italica
Seita.5G267600 10.0kb downstream 10.0kb downstream 13774 true scaffold_5: 32927307-32941080 Setaria italica
Seita.5G267600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 32927307-32937306 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177745 5267 Panicoideae View MSA
124572891 5269 Grass View MSA
122045291 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121310429 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.258     High  
cufflinks 10.145       Low
cufflinks 15.768     High  
cufflinks 22.952     High High
cufflinks 19.008     High High
cufflinks 11.614       Low
cufflinks 11.459       Low
cufflinks 13.213        
cufflinks 14.204     High  
cufflinks 13.251        
cufflinks 11.726       Low
cufflinks 16.39     High  
cufflinks 14.69     High  
cufflinks 13.366        
cufflinks 12.284        
cufflinks 16.302     High  
cufflinks 17.758     High  
cufflinks 19.733     High High
cufflinks 20.202     High High
cufflinks 15.363     High  

0 Strain