Gene : Seita.5G270300 S. italica v2.2
Defline:  (1 of 1) PTHR12548:SF14 - TRANSCRIPTION FACTOR-LIKE PROTEIN DPA Genomic Order:  2703
Name:  ? Seita.5G270300 Secondary Identifier:  ? PAC:32681984
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G270300 0.5kb upstream 0.5kb upstream 4605 true scaffold_5: 33165342-33169946 Setaria italica
Seita.5G270300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33169447-33169946 Setaria italica
Seita.5G270300 0.5kb downstream 0.5kb downstream 4605 true scaffold_5: 33164842-33169446 Setaria italica
Seita.5G270300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33164842-33165341 Setaria italica
Seita.5G270300 1.0kb upstream 1.0kb upstream 5105 true scaffold_5: 33165342-33170446 Setaria italica
Seita.5G270300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33169447-33170446 Setaria italica
Seita.5G270300 1.0kb downstream 1.0kb downstream 5105 true scaffold_5: 33164342-33169446 Setaria italica
Seita.5G270300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33164342-33165341 Setaria italica
Seita.5G270300 2.0kb upstream 2.0kb upstream 6105 true scaffold_5: 33165342-33171446 Setaria italica
Seita.5G270300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33169447-33171446 Setaria italica
Seita.5G270300 2.0kb downstream 2.0kb downstream 6105 true scaffold_5: 33163342-33169446 Setaria italica
Seita.5G270300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33163342-33165341 Setaria italica
Seita.5G270300 5.0kb upstream 5.0kb upstream 9105 true scaffold_5: 33165342-33174446 Setaria italica
Seita.5G270300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33169447-33174446 Setaria italica
Seita.5G270300 5.0kb downstream 5.0kb downstream 9105 true scaffold_5: 33160342-33169446 Setaria italica
Seita.5G270300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33160342-33165341 Setaria italica
Seita.5G270300 10.0kb upstream 10.0kb upstream 14105 true scaffold_5: 33165342-33179446 Setaria italica
Seita.5G270300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33169447-33179446 Setaria italica
Seita.5G270300 10.0kb downstream 10.0kb downstream 14105 true scaffold_5: 33155342-33169446 Setaria italica
Seita.5G270300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33155342-33165341 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183763 5267 Panicoideae View MSA
124577421 5269 Grass View MSA
122050879 5273 Angiosperm View MSA
121349411 5274 Embryophyte View MSA
123427533 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.415        
cufflinks 1.246       High
cufflinks 0.036     Low Low
cufflinks 0.039     Low Low
cufflinks 0.065     Low Low
cufflinks 1.186       High
cufflinks 0.326        
cufflinks 0.575        
cufflinks 0.371        
cufflinks 0.73        
cufflinks 0.369        
cufflinks 0.784        
cufflinks 0.319        
cufflinks 0.056     Low Low
cufflinks 0.685        
cufflinks 0.133        
cufflinks 1.057       High
cufflinks 0.072     Low Low
cufflinks 0.047     Low Low
cufflinks 0.976       High

0 Strain