Gene : Seita.5G272200 S. italica v2.2
Defline:  (1 of 1) PTHR12786:SF1 - PROTEIN SDE2 HOMOLOG Genomic Order:  2722
Name:  ? Seita.5G272200 Secondary Identifier:  ? PAC:32684560
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G272200 0.5kb upstream 0.5kb upstream 3441 true scaffold_5: 33355461-33358901 Setaria italica
Seita.5G272200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33355461-33355960 Setaria italica
Seita.5G272200 0.5kb downstream 0.5kb downstream 3441 true scaffold_5: 33355961-33359401 Setaria italica
Seita.5G272200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33358902-33359401 Setaria italica
Seita.5G272200 1.0kb upstream 1.0kb upstream 3941 true scaffold_5: 33354961-33358901 Setaria italica
Seita.5G272200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33354961-33355960 Setaria italica
Seita.5G272200 1.0kb downstream 1.0kb downstream 3941 true scaffold_5: 33355961-33359901 Setaria italica
Seita.5G272200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33358902-33359901 Setaria italica
Seita.5G272200 2.0kb upstream 2.0kb upstream 4941 true scaffold_5: 33353961-33358901 Setaria italica
Seita.5G272200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33353961-33355960 Setaria italica
Seita.5G272200 2.0kb downstream 2.0kb downstream 4941 true scaffold_5: 33355961-33360901 Setaria italica
Seita.5G272200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33358902-33360901 Setaria italica
Seita.5G272200 5.0kb upstream 5.0kb upstream 7941 true scaffold_5: 33350961-33358901 Setaria italica
Seita.5G272200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33350961-33355960 Setaria italica
Seita.5G272200 5.0kb downstream 5.0kb downstream 7941 true scaffold_5: 33355961-33363901 Setaria italica
Seita.5G272200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33358902-33363901 Setaria italica
Seita.5G272200 10.0kb upstream 10.0kb upstream 12941 true scaffold_5: 33345961-33358901 Setaria italica
Seita.5G272200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33345961-33355960 Setaria italica
Seita.5G272200 10.0kb downstream 10.0kb downstream 12941 true scaffold_5: 33355961-33368901 Setaria italica
Seita.5G272200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33358902-33368901 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176542 5267 Panicoideae View MSA
124577297 5269 Grass View MSA
122047648 5273 Angiosperm View MSA
121345169 5274 Embryophyte View MSA
123427367 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 109.64     High High
cufflinks 27.136     High Low
cufflinks 64.196     High  
cufflinks 71.779     High  
cufflinks 59.511     High  
cufflinks 29.998     High Low
cufflinks 32.919     High Low
cufflinks 49.284     High  
cufflinks 32.87     High Low
cufflinks 43.422     High  
cufflinks 61.746     High  
cufflinks 105.88     High High
cufflinks 51.659     High  
cufflinks 40.101     High  
cufflinks 40.164     High  
cufflinks 76.328     High  
cufflinks 71.295     High  
cufflinks 265.735     High High
cufflinks 50.038     High  
cufflinks 45.243     High  

0 Strain