Gene : Seita.5G275000 S. italica v2.2
Defline:  (1 of 189) PF00400 - WD domain, G-beta repeat (WD40) Genomic Order:  2750
Name:  ? Seita.5G275000 Secondary Identifier:  ? PAC:32686046
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G275000 0.5kb upstream 0.5kb upstream 9460 true scaffold_5: 33689851-33699310 Setaria italica
Seita.5G275000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33698811-33699310 Setaria italica
Seita.5G275000 0.5kb downstream 0.5kb downstream 9460 true scaffold_5: 33689351-33698810 Setaria italica
Seita.5G275000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33689351-33689850 Setaria italica
Seita.5G275000 1.0kb upstream 1.0kb upstream 9960 true scaffold_5: 33689851-33699810 Setaria italica
Seita.5G275000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33698811-33699810 Setaria italica
Seita.5G275000 1.0kb downstream 1.0kb downstream 9960 true scaffold_5: 33688851-33698810 Setaria italica
Seita.5G275000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33688851-33689850 Setaria italica
Seita.5G275000 2.0kb upstream 2.0kb upstream 10960 true scaffold_5: 33689851-33700810 Setaria italica
Seita.5G275000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33698811-33700810 Setaria italica
Seita.5G275000 2.0kb downstream 2.0kb downstream 10960 true scaffold_5: 33687851-33698810 Setaria italica
Seita.5G275000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33687851-33689850 Setaria italica
Seita.5G275000 5.0kb upstream 5.0kb upstream 13960 true scaffold_5: 33689851-33703810 Setaria italica
Seita.5G275000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33698811-33703810 Setaria italica
Seita.5G275000 5.0kb downstream 5.0kb downstream 13960 true scaffold_5: 33684851-33698810 Setaria italica
Seita.5G275000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33684851-33689850 Setaria italica
Seita.5G275000 10.0kb upstream 10.0kb upstream 18960 true scaffold_5: 33689851-33708810 Setaria italica
Seita.5G275000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33698811-33708810 Setaria italica
Seita.5G275000 10.0kb downstream 10.0kb downstream 18960 true scaffold_5: 33679851-33698810 Setaria italica
Seita.5G275000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33679851-33689850 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176836 5267 Panicoideae View MSA
124574745 5269 Grass View MSA
122045725 5273 Angiosperm View MSA
121344183 5274 Embryophyte View MSA
123426396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.276     High High
cufflinks 11.824        
cufflinks 15.471     High  
cufflinks 16.591     High  
cufflinks 15.544     High  
cufflinks 13.476     High  
cufflinks 11.901        
cufflinks 8.715       Low
cufflinks 13.503     High  
cufflinks 8.669       Low
cufflinks 14.591     High  
cufflinks 11.978        
cufflinks 15.813     High  
cufflinks 9.261       Low
cufflinks 12.157        
cufflinks 16.185     High  
cufflinks 11.06        
cufflinks 20.039     High High
cufflinks 10.601        
cufflinks 11.918        

0 Strain