Gene : Seita.5G211000 S. italica v2.2
Defline:  (1 of 2) PTHR33057:SF29 - F18B13.4 PROTEIN Genomic Order:  2110
Name:  ? Seita.5G211000 Secondary Identifier:  ? PAC:32681958
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G211000 0.5kb upstream 0.5kb upstream 1238 true scaffold_5: 27034979-27036216 Setaria italica
Seita.5G211000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 27034979-27035478 Setaria italica
Seita.5G211000 0.5kb downstream 0.5kb downstream 1238 true scaffold_5: 27035479-27036716 Setaria italica
Seita.5G211000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 27036217-27036716 Setaria italica
Seita.5G211000 1.0kb upstream 1.0kb upstream 1738 true scaffold_5: 27034479-27036216 Setaria italica
Seita.5G211000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 27034479-27035478 Setaria italica
Seita.5G211000 1.0kb downstream 1.0kb downstream 1738 true scaffold_5: 27035479-27037216 Setaria italica
Seita.5G211000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 27036217-27037216 Setaria italica
Seita.5G211000 2.0kb upstream 2.0kb upstream 2738 true scaffold_5: 27033479-27036216 Setaria italica
Seita.5G211000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 27033479-27035478 Setaria italica
Seita.5G211000 2.0kb downstream 2.0kb downstream 2738 true scaffold_5: 27035479-27038216 Setaria italica
Seita.5G211000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 27036217-27038216 Setaria italica
Seita.5G211000 5.0kb upstream 5.0kb upstream 5738 true scaffold_5: 27030479-27036216 Setaria italica
Seita.5G211000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 27030479-27035478 Setaria italica
Seita.5G211000 5.0kb downstream 5.0kb downstream 5738 true scaffold_5: 27035479-27041216 Setaria italica
Seita.5G211000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 27036217-27041216 Setaria italica
Seita.5G211000 10.0kb upstream 10.0kb upstream 10738 true scaffold_5: 27025479-27036216 Setaria italica
Seita.5G211000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 27025479-27035478 Setaria italica
Seita.5G211000 10.0kb downstream 10.0kb downstream 10738 true scaffold_5: 27035479-27046216 Setaria italica
Seita.5G211000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 27036217-27046216 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195870 5267 Panicoideae View MSA
124574816 5269 Grass View MSA
122050605 5273 Angiosperm View MSA
121312020 5274 Embryophyte View MSA
123349235 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low  
cufflinks 0.049     Low  
cufflinks 0.037     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.082     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.064     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain