Gene : Seita.5G213100 S. italica v2.2
Defline:  (1 of 1) PTHR10992//PTHR10992:SF841 - ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN Genomic Order:  2131
Name:  ? Seita.5G213100 Secondary Identifier:  ? PAC:32681801
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G213100 0.5kb upstream 0.5kb upstream 8118 true scaffold_5: 27208228-27216345 Setaria italica
Seita.5G213100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 27208228-27208727 Setaria italica
Seita.5G213100 0.5kb downstream 0.5kb downstream 8118 true scaffold_5: 27208728-27216845 Setaria italica
Seita.5G213100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 27216346-27216845 Setaria italica
Seita.5G213100 1.0kb upstream 1.0kb upstream 8618 true scaffold_5: 27207728-27216345 Setaria italica
Seita.5G213100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 27207728-27208727 Setaria italica
Seita.5G213100 1.0kb downstream 1.0kb downstream 8618 true scaffold_5: 27208728-27217345 Setaria italica
Seita.5G213100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 27216346-27217345 Setaria italica
Seita.5G213100 2.0kb upstream 2.0kb upstream 9618 true scaffold_5: 27206728-27216345 Setaria italica
Seita.5G213100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 27206728-27208727 Setaria italica
Seita.5G213100 2.0kb downstream 2.0kb downstream 9618 true scaffold_5: 27208728-27218345 Setaria italica
Seita.5G213100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 27216346-27218345 Setaria italica
Seita.5G213100 5.0kb upstream 5.0kb upstream 12618 true scaffold_5: 27203728-27216345 Setaria italica
Seita.5G213100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 27203728-27208727 Setaria italica
Seita.5G213100 5.0kb downstream 5.0kb downstream 12618 true scaffold_5: 27208728-27221345 Setaria italica
Seita.5G213100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 27216346-27221345 Setaria italica
Seita.5G213100 10.0kb upstream 10.0kb upstream 17618 true scaffold_5: 27198728-27216345 Setaria italica
Seita.5G213100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 27198728-27208727 Setaria italica
Seita.5G213100 10.0kb downstream 10.0kb downstream 17618 true scaffold_5: 27208728-27226345 Setaria italica
Seita.5G213100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 27216346-27226345 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180704 5267 Panicoideae View MSA
124579052 5269 Grass View MSA
122048522 5273 Angiosperm View MSA
123428977 5275 Viridiplantae View MSA
121350361 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.36        
cufflinks 0.238       Low
cufflinks 0.343        
cufflinks 0.401        
cufflinks 0.9        
cufflinks 0.244       Low
cufflinks 0.619        
cufflinks 0.558        
cufflinks 0.663        
cufflinks 1.386       High
cufflinks 0.894        
cufflinks 0.132       Low
cufflinks 0.309        
cufflinks 2.141       High
cufflinks 0.675        
cufflinks 0.722        
cufflinks 0.49        
cufflinks 1.225       High
cufflinks 1.414       High
cufflinks 0.158       Low

0 Strain