Gene : Seita.5G222800 S. italica v2.2
Defline:  (1 of 1) PTHR12121:SF48 - CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 Genomic Order:  2228
Name:  ? Seita.5G222800 Secondary Identifier:  ? PAC:32680818
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G222800 0.5kb upstream 0.5kb upstream 6729 true scaffold_5: 28291129-28297857 Setaria italica
Seita.5G222800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28297358-28297857 Setaria italica
Seita.5G222800 0.5kb downstream 0.5kb downstream 6729 true scaffold_5: 28290629-28297357 Setaria italica
Seita.5G222800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28290629-28291128 Setaria italica
Seita.5G222800 1.0kb upstream 1.0kb upstream 7229 true scaffold_5: 28291129-28298357 Setaria italica
Seita.5G222800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28297358-28298357 Setaria italica
Seita.5G222800 1.0kb downstream 1.0kb downstream 7229 true scaffold_5: 28290129-28297357 Setaria italica
Seita.5G222800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28290129-28291128 Setaria italica
Seita.5G222800 2.0kb upstream 2.0kb upstream 8229 true scaffold_5: 28291129-28299357 Setaria italica
Seita.5G222800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28297358-28299357 Setaria italica
Seita.5G222800 2.0kb downstream 2.0kb downstream 8229 true scaffold_5: 28289129-28297357 Setaria italica
Seita.5G222800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28289129-28291128 Setaria italica
Seita.5G222800 5.0kb upstream 5.0kb upstream 11229 true scaffold_5: 28291129-28302357 Setaria italica
Seita.5G222800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28297358-28302357 Setaria italica
Seita.5G222800 5.0kb downstream 5.0kb downstream 11229 true scaffold_5: 28286129-28297357 Setaria italica
Seita.5G222800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28286129-28291128 Setaria italica
Seita.5G222800 10.0kb upstream 10.0kb upstream 16229 true scaffold_5: 28291129-28307357 Setaria italica
Seita.5G222800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28297358-28307357 Setaria italica
Seita.5G222800 10.0kb downstream 10.0kb downstream 16229 true scaffold_5: 28281129-28297357 Setaria italica
Seita.5G222800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28281129-28291128 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180775 5267 Panicoideae View MSA
124573185 5269 Grass View MSA
122041541 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.35       High
cufflinks 7.621        
cufflinks 8.339        
cufflinks 7.23        
cufflinks 8.724        
cufflinks 7.705        
cufflinks 9.273        
cufflinks 9.333        
cufflinks 11.853       High
cufflinks 6.332       Low
cufflinks 8.647        
cufflinks 7.939        
cufflinks 6.907       Low
cufflinks 8.664        
cufflinks 7.709        
cufflinks 9.099        
cufflinks 9.535        
cufflinks 9.899       High
cufflinks 6.277       Low
cufflinks 7.663        

0 Strain