Gene : Seita.5G233000 S. italica v2.2
Defline:  (1 of 1) PF04969//PF05002//PF13414 - CS domain (CS) // SGS domain (SGS) // TPR repeat (TPR_11) Genomic Order:  2330
Name:  ? Seita.5G233000 Secondary Identifier:  ? PAC:32683620
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G233000 0.5kb upstream 0.5kb upstream 7809 true scaffold_5: 29509503-29517311 Setaria italica
Seita.5G233000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 29509503-29510002 Setaria italica
Seita.5G233000 0.5kb downstream 0.5kb downstream 7809 true scaffold_5: 29510003-29517811 Setaria italica
Seita.5G233000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 29517312-29517811 Setaria italica
Seita.5G233000 1.0kb upstream 1.0kb upstream 8309 true scaffold_5: 29509003-29517311 Setaria italica
Seita.5G233000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 29509003-29510002 Setaria italica
Seita.5G233000 1.0kb downstream 1.0kb downstream 8309 true scaffold_5: 29510003-29518311 Setaria italica
Seita.5G233000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 29517312-29518311 Setaria italica
Seita.5G233000 2.0kb upstream 2.0kb upstream 9309 true scaffold_5: 29508003-29517311 Setaria italica
Seita.5G233000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 29508003-29510002 Setaria italica
Seita.5G233000 2.0kb downstream 2.0kb downstream 9309 true scaffold_5: 29510003-29519311 Setaria italica
Seita.5G233000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 29517312-29519311 Setaria italica
Seita.5G233000 5.0kb upstream 5.0kb upstream 12309 true scaffold_5: 29505003-29517311 Setaria italica
Seita.5G233000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 29505003-29510002 Setaria italica
Seita.5G233000 5.0kb downstream 5.0kb downstream 12309 true scaffold_5: 29510003-29522311 Setaria italica
Seita.5G233000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 29517312-29522311 Setaria italica
Seita.5G233000 10.0kb upstream 10.0kb upstream 17309 true scaffold_5: 29500003-29517311 Setaria italica
Seita.5G233000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 29500003-29510002 Setaria italica
Seita.5G233000 10.0kb downstream 10.0kb downstream 17309 true scaffold_5: 29510003-29527311 Setaria italica
Seita.5G233000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 29517312-29527311 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182284 5267 Panicoideae View MSA
124576336 5269 Grass View MSA
122047508 5273 Angiosperm View MSA
121345317 5274 Embryophyte View MSA
123426836 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.876     High  
cufflinks 19.596     High  
cufflinks 14.5     High Low
cufflinks 16.498     High Low
cufflinks 18.779     High  
cufflinks 17.039     High Low
cufflinks 28.682     High  
cufflinks 23.638     High  
cufflinks 17.749     High  
cufflinks 54.168     High High
cufflinks 28.824     High  
cufflinks 42.976     High  
cufflinks 35.49     High  
cufflinks 18.987     High  
cufflinks 42.03     High  
cufflinks 41.286     High  
cufflinks 36.111     High  
cufflinks 110.479     High High
cufflinks 27.139     High  
cufflinks 29.228     High  

0 Strain