Gene : Seita.5G240500 S. italica v2.2
Defline:  (1 of 1) PTHR30544//PTHR30544:SF3 - 23S RRNA METHYLTRANSFERASE Genomic Order:  2405
Name:  ? Seita.5G240500 Secondary Identifier:  ? PAC:32684866
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G240500 0.5kb upstream 0.5kb upstream 4062 true scaffold_5: 30361907-30365968 Setaria italica
Seita.5G240500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30365469-30365968 Setaria italica
Seita.5G240500 0.5kb downstream 0.5kb downstream 4062 true scaffold_5: 30361407-30365468 Setaria italica
Seita.5G240500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30361407-30361906 Setaria italica
Seita.5G240500 1.0kb upstream 1.0kb upstream 4562 true scaffold_5: 30361907-30366468 Setaria italica
Seita.5G240500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30365469-30366468 Setaria italica
Seita.5G240500 1.0kb downstream 1.0kb downstream 4562 true scaffold_5: 30360907-30365468 Setaria italica
Seita.5G240500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30360907-30361906 Setaria italica
Seita.5G240500 2.0kb upstream 2.0kb upstream 5562 true scaffold_5: 30361907-30367468 Setaria italica
Seita.5G240500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30365469-30367468 Setaria italica
Seita.5G240500 2.0kb downstream 2.0kb downstream 5562 true scaffold_5: 30359907-30365468 Setaria italica
Seita.5G240500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30359907-30361906 Setaria italica
Seita.5G240500 5.0kb upstream 5.0kb upstream 8562 true scaffold_5: 30361907-30370468 Setaria italica
Seita.5G240500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30365469-30370468 Setaria italica
Seita.5G240500 5.0kb downstream 5.0kb downstream 8562 true scaffold_5: 30356907-30365468 Setaria italica
Seita.5G240500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30356907-30361906 Setaria italica
Seita.5G240500 10.0kb upstream 10.0kb upstream 13562 true scaffold_5: 30361907-30375468 Setaria italica
Seita.5G240500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30365469-30375468 Setaria italica
Seita.5G240500 10.0kb downstream 10.0kb downstream 13562 true scaffold_5: 30351907-30365468 Setaria italica
Seita.5G240500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30351907-30361906 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189289 5267 Panicoideae View MSA
124576485 5269 Grass View MSA
122043195 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346291 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.845        
cufflinks 1.671        
cufflinks 3.128        
cufflinks 2.636        
cufflinks 2.697        
cufflinks 1.738        
cufflinks 2.457        
cufflinks 3.552       High
cufflinks 3.342       High
cufflinks 1.38        
cufflinks 1.444        
cufflinks 1.24       Low
cufflinks 0.986       Low
cufflinks 3.064        
cufflinks 1.156       Low
cufflinks 3.587       High
cufflinks 1.358        
cufflinks 2.198        
cufflinks 3.425       High
cufflinks 0.973       Low

0 Strain