Gene : Seita.5G320100 S. italica v2.2
Defline:  (1 of 1) PTHR11941:SF94 - 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 5 Genomic Order:  3201
Name:  ? Seita.5G320100 Secondary Identifier:  ? PAC:32686507
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7574 Setaria italica pathologic  
Sitalica VALDEG-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G320100 0.5kb upstream 0.5kb upstream 7212 true scaffold_5: 36976791-36984002 Setaria italica
Seita.5G320100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36983503-36984002 Setaria italica
Seita.5G320100 0.5kb downstream 0.5kb downstream 7212 true scaffold_5: 36976291-36983502 Setaria italica
Seita.5G320100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36976291-36976790 Setaria italica
Seita.5G320100 1.0kb upstream 1.0kb upstream 7712 true scaffold_5: 36976791-36984502 Setaria italica
Seita.5G320100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36983503-36984502 Setaria italica
Seita.5G320100 1.0kb downstream 1.0kb downstream 7712 true scaffold_5: 36975791-36983502 Setaria italica
Seita.5G320100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36975791-36976790 Setaria italica
Seita.5G320100 2.0kb upstream 2.0kb upstream 8712 true scaffold_5: 36976791-36985502 Setaria italica
Seita.5G320100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36983503-36985502 Setaria italica
Seita.5G320100 2.0kb downstream 2.0kb downstream 8712 true scaffold_5: 36974791-36983502 Setaria italica
Seita.5G320100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36974791-36976790 Setaria italica
Seita.5G320100 5.0kb upstream 5.0kb upstream 11712 true scaffold_5: 36976791-36988502 Setaria italica
Seita.5G320100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36983503-36988502 Setaria italica
Seita.5G320100 5.0kb downstream 5.0kb downstream 11712 true scaffold_5: 36971791-36983502 Setaria italica
Seita.5G320100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36971791-36976790 Setaria italica
Seita.5G320100 10.0kb upstream 10.0kb upstream 16712 true scaffold_5: 36976791-36993502 Setaria italica
Seita.5G320100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36983503-36993502 Setaria italica
Seita.5G320100 10.0kb downstream 10.0kb downstream 16712 true scaffold_5: 36966791-36983502 Setaria italica
Seita.5G320100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36966791-36976790 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193166 5267 Panicoideae View MSA
124576820 5269 Grass View MSA
122044821 5273 Angiosperm View MSA
121345696 5274 Embryophyte View MSA
123428448 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.452        
cufflinks 7.898        
cufflinks 0.453       Low
cufflinks 0.292       Low
cufflinks 0.661       Low
cufflinks 6.464        
cufflinks 4.049        
cufflinks 3.967        
cufflinks 4.568        
cufflinks 5.126        
cufflinks 6.67        
cufflinks 11.332        
cufflinks 16.17     High High
cufflinks 0.783       Low
cufflinks 13.994       High
cufflinks 1.747        
cufflinks 8.917        
cufflinks 2.515        
cufflinks 0.591       Low
cufflinks 10.596        

0 Strain