Gene : Seita.5G318800 S. italica v2.2
Defline:  (1 of 14) 2.3.1.64 - Agmatine N(4)-coumaroyltransferase / p-coumaroyl-CoA-agmatine N-p-coumaroyltransferase Genomic Order:  3188
Name:  ? Seita.5G318800 Secondary Identifier:  ? PAC:32680964
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G318800 0.5kb upstream 0.5kb upstream 1841 true scaffold_5: 36889389-36891229 Setaria italica
Seita.5G318800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36890730-36891229 Setaria italica
Seita.5G318800 0.5kb downstream 0.5kb downstream 1841 true scaffold_5: 36888889-36890729 Setaria italica
Seita.5G318800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36888889-36889388 Setaria italica
Seita.5G318800 1.0kb upstream 1.0kb upstream 2341 true scaffold_5: 36889389-36891729 Setaria italica
Seita.5G318800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36890730-36891729 Setaria italica
Seita.5G318800 1.0kb downstream 1.0kb downstream 2341 true scaffold_5: 36888389-36890729 Setaria italica
Seita.5G318800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36888389-36889388 Setaria italica
Seita.5G318800 2.0kb upstream 2.0kb upstream 3341 true scaffold_5: 36889389-36892729 Setaria italica
Seita.5G318800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36890730-36892729 Setaria italica
Seita.5G318800 2.0kb downstream 2.0kb downstream 3341 true scaffold_5: 36887389-36890729 Setaria italica
Seita.5G318800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36887389-36889388 Setaria italica
Seita.5G318800 5.0kb upstream 5.0kb upstream 6341 true scaffold_5: 36889389-36895729 Setaria italica
Seita.5G318800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36890730-36895729 Setaria italica
Seita.5G318800 5.0kb downstream 5.0kb downstream 6341 true scaffold_5: 36884389-36890729 Setaria italica
Seita.5G318800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36884389-36889388 Setaria italica
Seita.5G318800 10.0kb upstream 10.0kb upstream 11341 true scaffold_5: 36889389-36900729 Setaria italica
Seita.5G318800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36890730-36900729 Setaria italica
Seita.5G318800 10.0kb downstream 10.0kb downstream 11341 true scaffold_5: 36879389-36890729 Setaria italica
Seita.5G318800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36879389-36889388 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199478 5267 Panicoideae View MSA
124586548 5269 Grass View MSA
122051149 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.981        
cufflinks 0.145       Low
cufflinks 0.196       Low
cufflinks 1.109        
cufflinks 3.102        
cufflinks 0.08     Low Low
cufflinks 0.98        
cufflinks 0.608        
cufflinks 4.217        
cufflinks 7.319       High
cufflinks 2.551        
cufflinks 11.099       High
cufflinks 2.016        
cufflinks 0.423        
cufflinks 0.454        
cufflinks 0.24       Low
cufflinks 7.017       High
cufflinks 0.282        
cufflinks 0.889        
cufflinks 8.689       High

0 Strain