Gene : Seita.5G320800 S. italica v2.2
Defline:  (1 of 1) PTHR33873:SF1 - TRANSCRIPTION FACTOR VOZ1 Genomic Order:  3208
Name:  ? Seita.5G320800 Secondary Identifier:  ? PAC:32680795
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G320800 0.5kb upstream 0.5kb upstream 5370 true scaffold_5: 37026768-37032137 Setaria italica
Seita.5G320800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37031638-37032137 Setaria italica
Seita.5G320800 0.5kb downstream 0.5kb downstream 5370 true scaffold_5: 37026268-37031637 Setaria italica
Seita.5G320800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37026268-37026767 Setaria italica
Seita.5G320800 1.0kb upstream 1.0kb upstream 5870 true scaffold_5: 37026768-37032637 Setaria italica
Seita.5G320800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37031638-37032637 Setaria italica
Seita.5G320800 1.0kb downstream 1.0kb downstream 5870 true scaffold_5: 37025768-37031637 Setaria italica
Seita.5G320800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37025768-37026767 Setaria italica
Seita.5G320800 2.0kb upstream 2.0kb upstream 6870 true scaffold_5: 37026768-37033637 Setaria italica
Seita.5G320800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37031638-37033637 Setaria italica
Seita.5G320800 2.0kb downstream 2.0kb downstream 6870 true scaffold_5: 37024768-37031637 Setaria italica
Seita.5G320800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37024768-37026767 Setaria italica
Seita.5G320800 5.0kb upstream 5.0kb upstream 9870 true scaffold_5: 37026768-37036637 Setaria italica
Seita.5G320800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37031638-37036637 Setaria italica
Seita.5G320800 5.0kb downstream 5.0kb downstream 9870 true scaffold_5: 37021768-37031637 Setaria italica
Seita.5G320800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37021768-37026767 Setaria italica
Seita.5G320800 10.0kb upstream 10.0kb upstream 14870 true scaffold_5: 37026768-37041637 Setaria italica
Seita.5G320800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37031638-37041637 Setaria italica
Seita.5G320800 10.0kb downstream 10.0kb downstream 14870 true scaffold_5: 37016768-37031637 Setaria italica
Seita.5G320800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37016768-37026767 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198488 5267 Panicoideae View MSA
124575606 5269 Grass View MSA
122043421 5273 Angiosperm View MSA
121348934 5274 Embryophyte View MSA
123381085 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.998        
cufflinks 4.403       Low
cufflinks 7.06        
cufflinks 7.208        
cufflinks 5.96        
cufflinks 4.383       Low
cufflinks 8.782       High
cufflinks 4.646        
cufflinks 4.179       Low
cufflinks 4.128       Low
cufflinks 4.038       Low
cufflinks 8.17       High
cufflinks 6.037        
cufflinks 7.197        
cufflinks 4.985        
cufflinks 9.544       High
cufflinks 6.887        
cufflinks 6.165        
cufflinks 10.122       High
cufflinks 5.236        

0 Strain