Gene : Seita.5G329200 S. italica v2.2
Defline:  (1 of 1) PF08755 - Hemimethylated DNA-binding protein YccV like (YccV-like) Genomic Order:  3292
Name:  ? Seita.5G329200 Secondary Identifier:  ? PAC:32682137
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G329200 0.5kb upstream 0.5kb upstream 5247 true scaffold_5: 37725116-37730362 Setaria italica
Seita.5G329200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37729863-37730362 Setaria italica
Seita.5G329200 0.5kb downstream 0.5kb downstream 5247 true scaffold_5: 37724616-37729862 Setaria italica
Seita.5G329200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37724616-37725115 Setaria italica
Seita.5G329200 1.0kb upstream 1.0kb upstream 5747 true scaffold_5: 37725116-37730862 Setaria italica
Seita.5G329200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37729863-37730862 Setaria italica
Seita.5G329200 1.0kb downstream 1.0kb downstream 5747 true scaffold_5: 37724116-37729862 Setaria italica
Seita.5G329200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37724116-37725115 Setaria italica
Seita.5G329200 2.0kb upstream 2.0kb upstream 6747 true scaffold_5: 37725116-37731862 Setaria italica
Seita.5G329200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37729863-37731862 Setaria italica
Seita.5G329200 2.0kb downstream 2.0kb downstream 6747 true scaffold_5: 37723116-37729862 Setaria italica
Seita.5G329200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37723116-37725115 Setaria italica
Seita.5G329200 5.0kb upstream 5.0kb upstream 9747 true scaffold_5: 37725116-37734862 Setaria italica
Seita.5G329200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37729863-37734862 Setaria italica
Seita.5G329200 5.0kb downstream 5.0kb downstream 9747 true scaffold_5: 37720116-37729862 Setaria italica
Seita.5G329200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37720116-37725115 Setaria italica
Seita.5G329200 10.0kb upstream 10.0kb upstream 14747 true scaffold_5: 37725116-37739862 Setaria italica
Seita.5G329200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37729863-37739862 Setaria italica
Seita.5G329200 10.0kb downstream 10.0kb downstream 14747 true scaffold_5: 37715116-37729862 Setaria italica
Seita.5G329200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37715116-37725115 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192863 5267 Panicoideae View MSA
124573461 5269 Grass View MSA
122042026 5273 Angiosperm View MSA
121345511 5274 Embryophyte View MSA
123424975 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.328        
cufflinks 6.604        
cufflinks 20.595     High  
cufflinks 21.353     High High
cufflinks 27.592     High High
cufflinks 7.331        
cufflinks 16.376     High  
cufflinks 23.209     High High
cufflinks 24.875     High High
cufflinks 1.988       Low
cufflinks 3.927        
cufflinks 2.525       Low
cufflinks 4.306        
cufflinks 10.243        
cufflinks 2.611       Low
cufflinks 22.595     High High
cufflinks 3.974        
cufflinks 5.336        
cufflinks 27.536     High High
cufflinks 2.615       Low

0 Strain