Gene : Seita.5G329400 S. italica v2.2
Defline:  (1 of 1) PTHR33317:SF1 - POLYNUCLEOTIDYL TRANSFERASE/ RIBONUCLEASE H-LIKE PROTEIN Genomic Order:  3294
Name:  ? Seita.5G329400 Secondary Identifier:  ? PAC:32683780
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G329400 0.5kb upstream 0.5kb upstream 4131 true scaffold_5: 37733653-37737783 Setaria italica
Seita.5G329400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37733653-37734152 Setaria italica
Seita.5G329400 0.5kb downstream 0.5kb downstream 4131 true scaffold_5: 37734153-37738283 Setaria italica
Seita.5G329400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37737784-37738283 Setaria italica
Seita.5G329400 1.0kb upstream 1.0kb upstream 4631 true scaffold_5: 37733153-37737783 Setaria italica
Seita.5G329400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37733153-37734152 Setaria italica
Seita.5G329400 1.0kb downstream 1.0kb downstream 4631 true scaffold_5: 37734153-37738783 Setaria italica
Seita.5G329400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37737784-37738783 Setaria italica
Seita.5G329400 2.0kb upstream 2.0kb upstream 5631 true scaffold_5: 37732153-37737783 Setaria italica
Seita.5G329400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37732153-37734152 Setaria italica
Seita.5G329400 2.0kb downstream 2.0kb downstream 5631 true scaffold_5: 37734153-37739783 Setaria italica
Seita.5G329400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37737784-37739783 Setaria italica
Seita.5G329400 5.0kb upstream 5.0kb upstream 8631 true scaffold_5: 37729153-37737783 Setaria italica
Seita.5G329400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37729153-37734152 Setaria italica
Seita.5G329400 5.0kb downstream 5.0kb downstream 8631 true scaffold_5: 37734153-37742783 Setaria italica
Seita.5G329400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37737784-37742783 Setaria italica
Seita.5G329400 10.0kb upstream 10.0kb upstream 13631 true scaffold_5: 37724153-37737783 Setaria italica
Seita.5G329400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37724153-37734152 Setaria italica
Seita.5G329400 10.0kb downstream 10.0kb downstream 13631 true scaffold_5: 37734153-37747783 Setaria italica
Seita.5G329400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37737784-37747783 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189091 5267 Panicoideae View MSA
124577257 5269 Grass View MSA
122048036 5273 Angiosperm View MSA
121349861 5274 Embryophyte View MSA
123381473 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.442        
cufflinks 2.03       High
cufflinks 0.626       Low
cufflinks 0.394       Low
cufflinks 0.637       Low
cufflinks 1.925       High
cufflinks 1.089        
cufflinks 1.23        
cufflinks 1.076        
cufflinks 1.882       High
cufflinks 1.547        
cufflinks 1.086        
cufflinks 1.195        
cufflinks 0.943        
cufflinks 1.472        
cufflinks 0.9        
cufflinks 1.651        
cufflinks 0.77        
cufflinks 0.497       Low
cufflinks 1.209        

0 Strain