Gene : Seita.5G329800 S. italica v2.2
Defline:  (1 of 2) PTHR21494 - ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 Genomic Order:  3298
Name:  ? Seita.5G329800 Secondary Identifier:  ? PAC:32680987
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G329800 0.5kb upstream 0.5kb upstream 9674 true scaffold_5: 37763651-37773324 Setaria italica
Seita.5G329800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37763651-37764150 Setaria italica
Seita.5G329800 0.5kb downstream 0.5kb downstream 9674 true scaffold_5: 37764151-37773824 Setaria italica
Seita.5G329800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37773325-37773824 Setaria italica
Seita.5G329800 1.0kb upstream 1.0kb upstream 10174 true scaffold_5: 37763151-37773324 Setaria italica
Seita.5G329800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37763151-37764150 Setaria italica
Seita.5G329800 1.0kb downstream 1.0kb downstream 10174 true scaffold_5: 37764151-37774324 Setaria italica
Seita.5G329800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37773325-37774324 Setaria italica
Seita.5G329800 2.0kb upstream 2.0kb upstream 11174 true scaffold_5: 37762151-37773324 Setaria italica
Seita.5G329800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37762151-37764150 Setaria italica
Seita.5G329800 2.0kb downstream 2.0kb downstream 11174 true scaffold_5: 37764151-37775324 Setaria italica
Seita.5G329800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37773325-37775324 Setaria italica
Seita.5G329800 5.0kb upstream 5.0kb upstream 14174 true scaffold_5: 37759151-37773324 Setaria italica
Seita.5G329800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37759151-37764150 Setaria italica
Seita.5G329800 5.0kb downstream 5.0kb downstream 14174 true scaffold_5: 37764151-37778324 Setaria italica
Seita.5G329800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37773325-37778324 Setaria italica
Seita.5G329800 10.0kb upstream 10.0kb upstream 19174 true scaffold_5: 37754151-37773324 Setaria italica
Seita.5G329800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37754151-37764150 Setaria italica
Seita.5G329800 10.0kb downstream 10.0kb downstream 19174 true scaffold_5: 37764151-37783324 Setaria italica
Seita.5G329800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37773325-37783324 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186087 5267 Panicoideae View MSA
124579026 5269 Grass View MSA
122043099 5273 Angiosperm View MSA
121349744 5274 Embryophyte View MSA
123381424 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.114        
cufflinks 6.288        
cufflinks 5.321        
cufflinks 4.592        
cufflinks 4.008        
cufflinks 6.046        
cufflinks 5.738        
cufflinks 2.819       Low
cufflinks 3.624       Low
cufflinks 3.48       Low
cufflinks 5.035        
cufflinks 4.949        
cufflinks 4.769        
cufflinks 4.243        
cufflinks 6.396        
cufflinks 7.144       High
cufflinks 4.026        
cufflinks 8.615       High
cufflinks 4.168        
cufflinks 4.121        

0 Strain