Gene : Seita.5G338800 S. italica v2.2
Defline:  (1 of 2) 2.7.4.21 - Inositol-hexakisphosphate kinase / IP6K Genomic Order:  3388
Name:  ? Seita.5G338800 Secondary Identifier:  ? PAC:32683894
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6369 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G338800 0.5kb upstream 0.5kb upstream 19400 true scaffold_5: 38489342-38508741 Setaria italica
Seita.5G338800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38508242-38508741 Setaria italica
Seita.5G338800 0.5kb downstream 0.5kb downstream 19400 true scaffold_5: 38488842-38508241 Setaria italica
Seita.5G338800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38488842-38489341 Setaria italica
Seita.5G338800 1.0kb upstream 1.0kb upstream 19900 true scaffold_5: 38489342-38509241 Setaria italica
Seita.5G338800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38508242-38509241 Setaria italica
Seita.5G338800 1.0kb downstream 1.0kb downstream 19900 true scaffold_5: 38488342-38508241 Setaria italica
Seita.5G338800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38488342-38489341 Setaria italica
Seita.5G338800 2.0kb upstream 2.0kb upstream 20900 true scaffold_5: 38489342-38510241 Setaria italica
Seita.5G338800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38508242-38510241 Setaria italica
Seita.5G338800 2.0kb downstream 2.0kb downstream 20900 true scaffold_5: 38487342-38508241 Setaria italica
Seita.5G338800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38487342-38489341 Setaria italica
Seita.5G338800 5.0kb upstream 5.0kb upstream 23900 true scaffold_5: 38489342-38513241 Setaria italica
Seita.5G338800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38508242-38513241 Setaria italica
Seita.5G338800 5.0kb downstream 5.0kb downstream 23900 true scaffold_5: 38484342-38508241 Setaria italica
Seita.5G338800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38484342-38489341 Setaria italica
Seita.5G338800 10.0kb upstream 10.0kb upstream 28900 true scaffold_5: 38489342-38518241 Setaria italica
Seita.5G338800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38508242-38518241 Setaria italica
Seita.5G338800 10.0kb downstream 10.0kb downstream 28900 true scaffold_5: 38479342-38508241 Setaria italica
Seita.5G338800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38479342-38489341 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992656 5273 Angiosperm View MSA
122191850 5267 Panicoideae View MSA
124570826 5269 Grass View MSA
121262998 5274 Embryophyte View MSA
123427581 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.242        
cufflinks 1.064        
cufflinks 0.107       Low
cufflinks 0.065     Low Low
cufflinks 0.05     Low Low
cufflinks 0.861        
cufflinks 0.574        
cufflinks 0.417        
cufflinks 0.384        
cufflinks 1.145        
cufflinks 1.932        
cufflinks 9.593       High
cufflinks 3.427        
cufflinks 0.157        
cufflinks 10.665       High
cufflinks 0.612        
cufflinks 9.551       High
cufflinks 0.448        
cufflinks 0.084     Low Low
cufflinks 9.137       High

0 Strain