Gene : Seita.5G340600 S. italica v2.2
Defline:  (1 of 1) PTHR12937 - VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 Genomic Order:  3406
Name:  ? Seita.5G340600 Secondary Identifier:  ? PAC:32681464
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G340600 0.5kb upstream 0.5kb upstream 1642 true scaffold_5: 38653629-38655270 Setaria italica
Seita.5G340600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38653629-38654128 Setaria italica
Seita.5G340600 0.5kb downstream 0.5kb downstream 1642 true scaffold_5: 38654129-38655770 Setaria italica
Seita.5G340600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38655271-38655770 Setaria italica
Seita.5G340600 1.0kb upstream 1.0kb upstream 2142 true scaffold_5: 38653129-38655270 Setaria italica
Seita.5G340600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38653129-38654128 Setaria italica
Seita.5G340600 1.0kb downstream 1.0kb downstream 2142 true scaffold_5: 38654129-38656270 Setaria italica
Seita.5G340600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38655271-38656270 Setaria italica
Seita.5G340600 2.0kb upstream 2.0kb upstream 3142 true scaffold_5: 38652129-38655270 Setaria italica
Seita.5G340600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38652129-38654128 Setaria italica
Seita.5G340600 2.0kb downstream 2.0kb downstream 3142 true scaffold_5: 38654129-38657270 Setaria italica
Seita.5G340600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38655271-38657270 Setaria italica
Seita.5G340600 5.0kb upstream 5.0kb upstream 6142 true scaffold_5: 38649129-38655270 Setaria italica
Seita.5G340600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38649129-38654128 Setaria italica
Seita.5G340600 5.0kb downstream 5.0kb downstream 6142 true scaffold_5: 38654129-38660270 Setaria italica
Seita.5G340600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38655271-38660270 Setaria italica
Seita.5G340600 10.0kb upstream 10.0kb upstream 11142 true scaffold_5: 38644129-38655270 Setaria italica
Seita.5G340600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38644129-38654128 Setaria italica
Seita.5G340600 10.0kb downstream 10.0kb downstream 11142 true scaffold_5: 38654129-38665270 Setaria italica
Seita.5G340600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38655271-38665270 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181735 5267 Panicoideae View MSA
124572252 5269 Grass View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.062        
cufflinks 6.967       Low
cufflinks 8.188       Low
cufflinks 11.586     High  
cufflinks 12.994     High  
cufflinks 8.142       Low
cufflinks 12.118        
cufflinks 8.004       Low
cufflinks 10.125        
cufflinks 28.292     High High
cufflinks 10.086        
cufflinks 15.609     High  
cufflinks 14.137     High  
cufflinks 14.981     High  
cufflinks 11.068        
cufflinks 16.194     High  
cufflinks 9.684        
cufflinks 26.246     High High
cufflinks 11.442     High  
cufflinks 14.293        

0 Strain