Gene : Seita.5G340300 S. italica v2.2
Defline:  (1 of 13) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  3403
Name:  ? Seita.5G340300 Secondary Identifier:  ? PAC:32682804
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G340300 0.5kb upstream 0.5kb upstream 3420 true scaffold_5: 38635692-38639111 Setaria italica
Seita.5G340300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38638612-38639111 Setaria italica
Seita.5G340300 0.5kb downstream 0.5kb downstream 3420 true scaffold_5: 38635192-38638611 Setaria italica
Seita.5G340300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38635192-38635691 Setaria italica
Seita.5G340300 1.0kb upstream 1.0kb upstream 3920 true scaffold_5: 38635692-38639611 Setaria italica
Seita.5G340300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38638612-38639611 Setaria italica
Seita.5G340300 1.0kb downstream 1.0kb downstream 3920 true scaffold_5: 38634692-38638611 Setaria italica
Seita.5G340300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38634692-38635691 Setaria italica
Seita.5G340300 2.0kb upstream 2.0kb upstream 4920 true scaffold_5: 38635692-38640611 Setaria italica
Seita.5G340300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38638612-38640611 Setaria italica
Seita.5G340300 2.0kb downstream 2.0kb downstream 4920 true scaffold_5: 38633692-38638611 Setaria italica
Seita.5G340300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38633692-38635691 Setaria italica
Seita.5G340300 5.0kb upstream 5.0kb upstream 7920 true scaffold_5: 38635692-38643611 Setaria italica
Seita.5G340300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38638612-38643611 Setaria italica
Seita.5G340300 5.0kb downstream 5.0kb downstream 7920 true scaffold_5: 38630692-38638611 Setaria italica
Seita.5G340300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38630692-38635691 Setaria italica
Seita.5G340300 10.0kb upstream 10.0kb upstream 12920 true scaffold_5: 38635692-38648611 Setaria italica
Seita.5G340300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38638612-38648611 Setaria italica
Seita.5G340300 10.0kb downstream 10.0kb downstream 12920 true scaffold_5: 38625692-38638611 Setaria italica
Seita.5G340300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38625692-38635691 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185031 5267 Panicoideae View MSA
124578375 5269 Grass View MSA
122050644 5273 Angiosperm View MSA
121312043 5274 Embryophyte View MSA
123349254 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.022     Low  
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.148       High
cufflinks 0.005     Low Low
cufflinks 0.018     Low  
cufflinks 0.004     Low Low
cufflinks 0.085     Low  
cufflinks 0.145       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain