Gene : Seita.5G345600 S. italica v2.2
Defline:  (1 of 2) 2.7.8.5 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase / Phosphatidylglycerophosphate synthase Genomic Order:  3456
Name:  ? Seita.5G345600 Secondary Identifier:  ? PAC:32683664
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY4FS-7 Setaria italica pathologic  
Sitalica PWY-5269 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G345600 0.5kb upstream 0.5kb upstream 4161 true scaffold_5: 38991580-38995740 Setaria italica
Seita.5G345600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38995241-38995740 Setaria italica
Seita.5G345600 0.5kb downstream 0.5kb downstream 4161 true scaffold_5: 38991080-38995240 Setaria italica
Seita.5G345600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38991080-38991579 Setaria italica
Seita.5G345600 1.0kb upstream 1.0kb upstream 4661 true scaffold_5: 38991580-38996240 Setaria italica
Seita.5G345600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38995241-38996240 Setaria italica
Seita.5G345600 1.0kb downstream 1.0kb downstream 4661 true scaffold_5: 38990580-38995240 Setaria italica
Seita.5G345600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38990580-38991579 Setaria italica
Seita.5G345600 2.0kb upstream 2.0kb upstream 5661 true scaffold_5: 38991580-38997240 Setaria italica
Seita.5G345600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38995241-38997240 Setaria italica
Seita.5G345600 2.0kb downstream 2.0kb downstream 5661 true scaffold_5: 38989580-38995240 Setaria italica
Seita.5G345600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38989580-38991579 Setaria italica
Seita.5G345600 5.0kb upstream 5.0kb upstream 8661 true scaffold_5: 38991580-39000240 Setaria italica
Seita.5G345600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38995241-39000240 Setaria italica
Seita.5G345600 5.0kb downstream 5.0kb downstream 8661 true scaffold_5: 38986580-38995240 Setaria italica
Seita.5G345600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38986580-38991579 Setaria italica
Seita.5G345600 10.0kb upstream 10.0kb upstream 13661 true scaffold_5: 38991580-39005240 Setaria italica
Seita.5G345600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38995241-39005240 Setaria italica
Seita.5G345600 10.0kb downstream 10.0kb downstream 13661 true scaffold_5: 38981580-38995240 Setaria italica
Seita.5G345600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38981580-38991579 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041507 5273 Angiosperm View MSA
122189432 5267 Panicoideae View MSA
124575796 5269 Grass View MSA
121347843 5274 Embryophyte View MSA
123423962 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.001        
cufflinks 5.724       High
cufflinks 3.603        
cufflinks 5.016       High
cufflinks 4.0        
cufflinks 5.455       High
cufflinks 2.082       Low
cufflinks 4.332        
cufflinks 2.464       Low
cufflinks 3.719        
cufflinks 2.558       Low
cufflinks 4.081        
cufflinks 2.83        
cufflinks 4.017        
cufflinks 3.436        
cufflinks 2.206       Low
cufflinks 5.204       High
cufflinks 6.276       High
cufflinks 2.865        
cufflinks 2.977        

0 Strain