Gene : Seita.5G354400 S. italica v2.2
Defline:  (1 of 1) PTHR12838 - U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 Genomic Order:  3544
Name:  ? Seita.5G354400 Secondary Identifier:  ? PAC:32683795
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G354400 0.5kb upstream 0.5kb upstream 3318 true scaffold_5: 39600237-39603554 Setaria italica
Seita.5G354400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39603055-39603554 Setaria italica
Seita.5G354400 0.5kb downstream 0.5kb downstream 3318 true scaffold_5: 39599737-39603054 Setaria italica
Seita.5G354400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39599737-39600236 Setaria italica
Seita.5G354400 1.0kb upstream 1.0kb upstream 3818 true scaffold_5: 39600237-39604054 Setaria italica
Seita.5G354400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39603055-39604054 Setaria italica
Seita.5G354400 1.0kb downstream 1.0kb downstream 3818 true scaffold_5: 39599237-39603054 Setaria italica
Seita.5G354400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39599237-39600236 Setaria italica
Seita.5G354400 2.0kb upstream 2.0kb upstream 4818 true scaffold_5: 39600237-39605054 Setaria italica
Seita.5G354400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39603055-39605054 Setaria italica
Seita.5G354400 2.0kb downstream 2.0kb downstream 4818 true scaffold_5: 39598237-39603054 Setaria italica
Seita.5G354400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39598237-39600236 Setaria italica
Seita.5G354400 5.0kb upstream 5.0kb upstream 7818 true scaffold_5: 39600237-39608054 Setaria italica
Seita.5G354400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39603055-39608054 Setaria italica
Seita.5G354400 5.0kb downstream 5.0kb downstream 7818 true scaffold_5: 39595237-39603054 Setaria italica
Seita.5G354400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39595237-39600236 Setaria italica
Seita.5G354400 10.0kb upstream 10.0kb upstream 12818 true scaffold_5: 39600237-39613054 Setaria italica
Seita.5G354400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39603055-39613054 Setaria italica
Seita.5G354400 10.0kb downstream 10.0kb downstream 12818 true scaffold_5: 39590237-39603054 Setaria italica
Seita.5G354400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39590237-39600236 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026243 5273 Angiosperm View MSA
122179639 5267 Panicoideae View MSA
124578921 5269 Grass View MSA
121350042 5274 Embryophyte View MSA
123425029 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.872        
cufflinks 13.972     High High
cufflinks 7.775        
cufflinks 5.931       Low
cufflinks 7.046       Low
cufflinks 13.946     High High
cufflinks 9.223        
cufflinks 12.387       High
cufflinks 11.71        
cufflinks 7.467        
cufflinks 9.276        
cufflinks 10.839        
cufflinks 9.006        
cufflinks 10.665        
cufflinks 10.798        
cufflinks 8.389        
cufflinks 12.403       High
cufflinks 9.609        
cufflinks 5.965       Low
cufflinks 9.822        

0 Strain