Gene : Seita.5G283300 S. italica v2.2
Genomic Order:  2833 Name:  ? Seita.5G283300
Secondary Identifier:  ? PAC:32681744
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G283300 0.5kb upstream 0.5kb upstream 5654 true scaffold_5: 34214419-34220072 Setaria italica
Seita.5G283300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 34214419-34214918 Setaria italica
Seita.5G283300 0.5kb downstream 0.5kb downstream 5654 true scaffold_5: 34214919-34220572 Setaria italica
Seita.5G283300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 34220073-34220572 Setaria italica
Seita.5G283300 1.0kb upstream 1.0kb upstream 6154 true scaffold_5: 34213919-34220072 Setaria italica
Seita.5G283300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 34213919-34214918 Setaria italica
Seita.5G283300 1.0kb downstream 1.0kb downstream 6154 true scaffold_5: 34214919-34221072 Setaria italica
Seita.5G283300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 34220073-34221072 Setaria italica
Seita.5G283300 2.0kb upstream 2.0kb upstream 7154 true scaffold_5: 34212919-34220072 Setaria italica
Seita.5G283300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 34212919-34214918 Setaria italica
Seita.5G283300 2.0kb downstream 2.0kb downstream 7154 true scaffold_5: 34214919-34222072 Setaria italica
Seita.5G283300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 34220073-34222072 Setaria italica
Seita.5G283300 5.0kb upstream 5.0kb upstream 10154 true scaffold_5: 34209919-34220072 Setaria italica
Seita.5G283300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 34209919-34214918 Setaria italica
Seita.5G283300 5.0kb downstream 5.0kb downstream 10154 true scaffold_5: 34214919-34225072 Setaria italica
Seita.5G283300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 34220073-34225072 Setaria italica
Seita.5G283300 10.0kb upstream 10.0kb upstream 15154 true scaffold_5: 34204919-34220072 Setaria italica
Seita.5G283300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 34204919-34214918 Setaria italica
Seita.5G283300 10.0kb downstream 10.0kb downstream 15154 true scaffold_5: 34214919-34230072 Setaria italica
Seita.5G283300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 34220073-34230072 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026281 5273 Angiosperm View MSA
122182014 5267 Panicoideae View MSA
124580098 5269 Grass View MSA
121348524 5274 Embryophyte View MSA
123380897 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.639        
cufflinks 1.81        
cufflinks 3.188       High
cufflinks 3.316       High
cufflinks 3.295       High
cufflinks 1.887        
cufflinks 1.63        
cufflinks 2.923       High
cufflinks 2.598        
cufflinks 1.313       Low
cufflinks 1.395        
cufflinks 1.347       Low
cufflinks 1.72        
cufflinks 2.3        
cufflinks 1.359       Low
cufflinks 1.779        
cufflinks 1.786        
cufflinks 1.403        
cufflinks 2.762       High
cufflinks 1.383       Low

0 Strain