Gene : Seita.5G300000 S. italica v2.2
Defline:  (1 of 2) PTHR23416//PTHR23416:SF67 - SIALIC ACID SYNTHASE-RELATED Genomic Order:  3000
Name:  ? Seita.5G300000 Secondary Identifier:  ? PAC:32683949
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CYSTSYN-PWY Setaria italica pathologic  
Sitalica PWY-6936 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G300000 0.5kb upstream 0.5kb upstream 1851 true scaffold_5: 35482017-35483867 Setaria italica
Seita.5G300000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35482017-35482516 Setaria italica
Seita.5G300000 0.5kb downstream 0.5kb downstream 1851 true scaffold_5: 35482517-35484367 Setaria italica
Seita.5G300000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35483868-35484367 Setaria italica
Seita.5G300000 1.0kb upstream 1.0kb upstream 2351 true scaffold_5: 35481517-35483867 Setaria italica
Seita.5G300000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35481517-35482516 Setaria italica
Seita.5G300000 1.0kb downstream 1.0kb downstream 2351 true scaffold_5: 35482517-35484867 Setaria italica
Seita.5G300000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35483868-35484867 Setaria italica
Seita.5G300000 2.0kb upstream 2.0kb upstream 3351 true scaffold_5: 35480517-35483867 Setaria italica
Seita.5G300000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35480517-35482516 Setaria italica
Seita.5G300000 2.0kb downstream 2.0kb downstream 3351 true scaffold_5: 35482517-35485867 Setaria italica
Seita.5G300000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35483868-35485867 Setaria italica
Seita.5G300000 5.0kb upstream 5.0kb upstream 6351 true scaffold_5: 35477517-35483867 Setaria italica
Seita.5G300000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35477517-35482516 Setaria italica
Seita.5G300000 5.0kb downstream 5.0kb downstream 6351 true scaffold_5: 35482517-35488867 Setaria italica
Seita.5G300000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35483868-35488867 Setaria italica
Seita.5G300000 10.0kb upstream 10.0kb upstream 11351 true scaffold_5: 35472517-35483867 Setaria italica
Seita.5G300000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35472517-35482516 Setaria italica
Seita.5G300000 10.0kb downstream 10.0kb downstream 11351 true scaffold_5: 35482517-35493867 Setaria italica
Seita.5G300000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35483868-35493867 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178876 5267 Panicoideae View MSA
124579116 5269 Grass View MSA
122047158 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.456        
cufflinks 0.302       Low
cufflinks 4.591        
cufflinks 8.193       High
cufflinks 8.439       High
cufflinks 0.132     Low Low
cufflinks 3.767        
cufflinks 4.781        
cufflinks 4.66        
cufflinks 1.965        
cufflinks 0.421        
cufflinks 3.268        
cufflinks 1.43        
cufflinks 4.167        
cufflinks 0.102     Low Low
cufflinks 10.762       High
cufflinks 1.924        
cufflinks 1.359        
cufflinks 6.837        
cufflinks 0.277       Low

0 Strain