Gene : Seita.5G310300 S. italica v2.2
Defline:  (1 of 2) 2.5.1.58 - Protein farnesyltransferase / FTase Genomic Order:  3103
Name:  ? Seita.5G310300 Secondary Identifier:  ? PAC:32685517
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G310300 0.5kb upstream 0.5kb upstream 4759 true scaffold_5: 36233505-36238263 Setaria italica
Seita.5G310300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36237764-36238263 Setaria italica
Seita.5G310300 0.5kb downstream 0.5kb downstream 4759 true scaffold_5: 36233005-36237763 Setaria italica
Seita.5G310300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36233005-36233504 Setaria italica
Seita.5G310300 1.0kb upstream 1.0kb upstream 5259 true scaffold_5: 36233505-36238763 Setaria italica
Seita.5G310300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36237764-36238763 Setaria italica
Seita.5G310300 1.0kb downstream 1.0kb downstream 5259 true scaffold_5: 36232505-36237763 Setaria italica
Seita.5G310300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36232505-36233504 Setaria italica
Seita.5G310300 2.0kb upstream 2.0kb upstream 6259 true scaffold_5: 36233505-36239763 Setaria italica
Seita.5G310300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36237764-36239763 Setaria italica
Seita.5G310300 2.0kb downstream 2.0kb downstream 6259 true scaffold_5: 36231505-36237763 Setaria italica
Seita.5G310300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36231505-36233504 Setaria italica
Seita.5G310300 5.0kb upstream 5.0kb upstream 9259 true scaffold_5: 36233505-36242763 Setaria italica
Seita.5G310300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36237764-36242763 Setaria italica
Seita.5G310300 5.0kb downstream 5.0kb downstream 9259 true scaffold_5: 36228505-36237763 Setaria italica
Seita.5G310300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36228505-36233504 Setaria italica
Seita.5G310300 10.0kb upstream 10.0kb upstream 14259 true scaffold_5: 36233505-36247763 Setaria italica
Seita.5G310300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36237764-36247763 Setaria italica
Seita.5G310300 10.0kb downstream 10.0kb downstream 14259 true scaffold_5: 36223505-36237763 Setaria italica
Seita.5G310300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36223505-36233504 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187413 5267 Panicoideae View MSA
124577131 5269 Grass View MSA
122048431 5273 Angiosperm View MSA
123428886 5275 Viridiplantae View MSA
121348360 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.001        
cufflinks 9.554        
cufflinks 8.129        
cufflinks 9.384        
cufflinks 6.78       Low
cufflinks 10.389        
cufflinks 8.646        
cufflinks 9.185        
cufflinks 6.328       Low
cufflinks 10.404        
cufflinks 9.082        
cufflinks 13.519       High
cufflinks 11.14        
cufflinks 8.177        
cufflinks 9.184        
cufflinks 10.756        
cufflinks 12.373       High
cufflinks 15.175     High High
cufflinks 7.828        
cufflinks 10.816        

0 Strain