Gene : Seita.5G314800 S. italica v2.2
Defline:  (1 of 2) PTHR11909:SF73 - PROTEIN KINASE FAMILY PROTEIN Genomic Order:  3148
Name:  ? Seita.5G314800 Secondary Identifier:  ? PAC:32683992
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G314800 0.5kb upstream 0.5kb upstream 7281 true scaffold_5: 36596244-36603524 Setaria italica
Seita.5G314800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36603025-36603524 Setaria italica
Seita.5G314800 0.5kb downstream 0.5kb downstream 7281 true scaffold_5: 36595744-36603024 Setaria italica
Seita.5G314800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36595744-36596243 Setaria italica
Seita.5G314800 1.0kb upstream 1.0kb upstream 7781 true scaffold_5: 36596244-36604024 Setaria italica
Seita.5G314800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36603025-36604024 Setaria italica
Seita.5G314800 1.0kb downstream 1.0kb downstream 7781 true scaffold_5: 36595244-36603024 Setaria italica
Seita.5G314800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36595244-36596243 Setaria italica
Seita.5G314800 2.0kb upstream 2.0kb upstream 8781 true scaffold_5: 36596244-36605024 Setaria italica
Seita.5G314800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36603025-36605024 Setaria italica
Seita.5G314800 2.0kb downstream 2.0kb downstream 8781 true scaffold_5: 36594244-36603024 Setaria italica
Seita.5G314800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36594244-36596243 Setaria italica
Seita.5G314800 5.0kb upstream 5.0kb upstream 11781 true scaffold_5: 36596244-36608024 Setaria italica
Seita.5G314800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36603025-36608024 Setaria italica
Seita.5G314800 5.0kb downstream 5.0kb downstream 11781 true scaffold_5: 36591244-36603024 Setaria italica
Seita.5G314800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36591244-36596243 Setaria italica
Seita.5G314800 10.0kb upstream 10.0kb upstream 16781 true scaffold_5: 36596244-36613024 Setaria italica
Seita.5G314800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36603025-36613024 Setaria italica
Seita.5G314800 10.0kb downstream 10.0kb downstream 16781 true scaffold_5: 36586244-36603024 Setaria italica
Seita.5G314800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36586244-36596243 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195392 5267 Panicoideae View MSA
124572882 5269 Grass View MSA
122042474 5273 Angiosperm View MSA
121348190 5274 Embryophyte View MSA
123427857 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.842       High
cufflinks 10.709       High
cufflinks 5.938        
cufflinks 5.388       Low
cufflinks 4.374       Low
cufflinks 10.39       High
cufflinks 8.374        
cufflinks 5.172       Low
cufflinks 5.901        
cufflinks 9.048        
cufflinks 9.35        
cufflinks 7.979        
cufflinks 7.356        
cufflinks 5.059       Low
cufflinks 8.464        
cufflinks 9.108        
cufflinks 8.128        
cufflinks 9.607        
cufflinks 4.85       Low
cufflinks 8.068        

0 Strain