Gene : Seita.5G315800 S. italica v2.2
Defline:  (1 of 4) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  3158
Name:  ? Seita.5G315800 Secondary Identifier:  ? PAC:32686225
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7101 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G315800 0.5kb upstream 0.5kb upstream 4249 true scaffold_5: 36690941-36695189 Setaria italica
Seita.5G315800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36694690-36695189 Setaria italica
Seita.5G315800 0.5kb downstream 0.5kb downstream 4249 true scaffold_5: 36690441-36694689 Setaria italica
Seita.5G315800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36690441-36690940 Setaria italica
Seita.5G315800 1.0kb upstream 1.0kb upstream 4749 true scaffold_5: 36690941-36695689 Setaria italica
Seita.5G315800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36694690-36695689 Setaria italica
Seita.5G315800 1.0kb downstream 1.0kb downstream 4749 true scaffold_5: 36689941-36694689 Setaria italica
Seita.5G315800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36689941-36690940 Setaria italica
Seita.5G315800 2.0kb upstream 2.0kb upstream 5749 true scaffold_5: 36690941-36696689 Setaria italica
Seita.5G315800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36694690-36696689 Setaria italica
Seita.5G315800 2.0kb downstream 2.0kb downstream 5749 true scaffold_5: 36688941-36694689 Setaria italica
Seita.5G315800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36688941-36690940 Setaria italica
Seita.5G315800 5.0kb upstream 5.0kb upstream 8749 true scaffold_5: 36690941-36699689 Setaria italica
Seita.5G315800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36694690-36699689 Setaria italica
Seita.5G315800 5.0kb downstream 5.0kb downstream 8749 true scaffold_5: 36685941-36694689 Setaria italica
Seita.5G315800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36685941-36690940 Setaria italica
Seita.5G315800 10.0kb upstream 10.0kb upstream 13749 true scaffold_5: 36690941-36704689 Setaria italica
Seita.5G315800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36694690-36704689 Setaria italica
Seita.5G315800 10.0kb downstream 10.0kb downstream 13749 true scaffold_5: 36680941-36694689 Setaria italica
Seita.5G315800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36680941-36690940 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185928 5267 Panicoideae View MSA
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.04     Low  
cufflinks 0.042     Low  
cufflinks 0.005     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.053     Low  
cufflinks 0.099     Low  
cufflinks 0.06     Low  
cufflinks 0.004     Low Low
cufflinks 0.25     Low  
cufflinks 0.111     Low  
cufflinks 0.877       High
cufflinks 0.277        
cufflinks 0.04     Low  
cufflinks 1.866       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.397        
cufflinks 0.033     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.077       High

0 Strain