Gene : Seita.5G399300 S. italica v2.2
Defline:  (1 of 1) PTHR23421:SF67 - BETA-GALACTOSIDASE 10 Genomic Order:  3993
Name:  ? Seita.5G399300 Secondary Identifier:  ? PAC:32683117
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G399300 0.5kb upstream 0.5kb upstream 8666 true scaffold_5: 42747352-42756017 Setaria italica
Seita.5G399300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42747352-42747851 Setaria italica
Seita.5G399300 0.5kb downstream 0.5kb downstream 8666 true scaffold_5: 42747852-42756517 Setaria italica
Seita.5G399300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42756018-42756517 Setaria italica
Seita.5G399300 1.0kb upstream 1.0kb upstream 9166 true scaffold_5: 42746852-42756017 Setaria italica
Seita.5G399300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42746852-42747851 Setaria italica
Seita.5G399300 1.0kb downstream 1.0kb downstream 9166 true scaffold_5: 42747852-42757017 Setaria italica
Seita.5G399300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42756018-42757017 Setaria italica
Seita.5G399300 2.0kb upstream 2.0kb upstream 10166 true scaffold_5: 42745852-42756017 Setaria italica
Seita.5G399300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42745852-42747851 Setaria italica
Seita.5G399300 2.0kb downstream 2.0kb downstream 10166 true scaffold_5: 42747852-42758017 Setaria italica
Seita.5G399300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42756018-42758017 Setaria italica
Seita.5G399300 5.0kb upstream 5.0kb upstream 13166 true scaffold_5: 42742852-42756017 Setaria italica
Seita.5G399300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42742852-42747851 Setaria italica
Seita.5G399300 5.0kb downstream 5.0kb downstream 13166 true scaffold_5: 42747852-42761017 Setaria italica
Seita.5G399300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42756018-42761017 Setaria italica
Seita.5G399300 10.0kb upstream 10.0kb upstream 18166 true scaffold_5: 42737852-42756017 Setaria italica
Seita.5G399300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42737852-42747851 Setaria italica
Seita.5G399300 10.0kb downstream 10.0kb downstream 18166 true scaffold_5: 42747852-42766017 Setaria italica
Seita.5G399300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42756018-42766017 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188348 5267 Panicoideae View MSA
124575608 5269 Grass View MSA
122049621 5273 Angiosperm View MSA
121350261 5274 Embryophyte View MSA
123428653 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.017       High
cufflinks 4.042        
cufflinks 0.006     Low Low
cufflinks 0.002     Low Low
cufflinks 0.102        
cufflinks 3.765        
cufflinks 1.326        
cufflinks 2.059        
cufflinks 2.907        
cufflinks 4.839        
cufflinks 7.395       High
cufflinks 0.762        
cufflinks 1.022        
cufflinks 0.01     Low Low
cufflinks 0.645        
cufflinks 0.996        
cufflinks 0.621        
cufflinks 0.629        
cufflinks 0.004     Low Low
cufflinks 0.471        

0 Strain