Gene : Seita.5G425200 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  4252
Name:  ? Seita.5G425200 Secondary Identifier:  ? PAC:32681783
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G425200 0.5kb upstream 0.5kb upstream 2682 true scaffold_5: 44556183-44558864 Setaria italica
Seita.5G425200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44556183-44556682 Setaria italica
Seita.5G425200 0.5kb downstream 0.5kb downstream 2682 true scaffold_5: 44556683-44559364 Setaria italica
Seita.5G425200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44558865-44559364 Setaria italica
Seita.5G425200 1.0kb upstream 1.0kb upstream 3182 true scaffold_5: 44555683-44558864 Setaria italica
Seita.5G425200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44555683-44556682 Setaria italica
Seita.5G425200 1.0kb downstream 1.0kb downstream 3182 true scaffold_5: 44556683-44559864 Setaria italica
Seita.5G425200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44558865-44559864 Setaria italica
Seita.5G425200 2.0kb upstream 2.0kb upstream 4182 true scaffold_5: 44554683-44558864 Setaria italica
Seita.5G425200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44554683-44556682 Setaria italica
Seita.5G425200 2.0kb downstream 2.0kb downstream 4182 true scaffold_5: 44556683-44560864 Setaria italica
Seita.5G425200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44558865-44560864 Setaria italica
Seita.5G425200 5.0kb upstream 5.0kb upstream 7182 true scaffold_5: 44551683-44558864 Setaria italica
Seita.5G425200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44551683-44556682 Setaria italica
Seita.5G425200 5.0kb downstream 5.0kb downstream 7182 true scaffold_5: 44556683-44563864 Setaria italica
Seita.5G425200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44558865-44563864 Setaria italica
Seita.5G425200 10.0kb upstream 10.0kb upstream 12182 true scaffold_5: 44546683-44558864 Setaria italica
Seita.5G425200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44546683-44556682 Setaria italica
Seita.5G425200 10.0kb downstream 10.0kb downstream 12182 true scaffold_5: 44556683-44568864 Setaria italica
Seita.5G425200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44558865-44568864 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189213 5267 Panicoideae View MSA
124582189 5269 Grass View MSA
122042535 5273 Angiosperm View MSA
121309984 5274 Embryophyte View MSA
123347596 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.985        
cufflinks 1.866       High
cufflinks 0.589        
cufflinks 0.323       Low
cufflinks 0.324       Low
cufflinks 1.69       High
cufflinks 0.825        
cufflinks 0.946        
cufflinks 1.151        
cufflinks 0.495       Low
cufflinks 1.077        
cufflinks 1.25        
cufflinks 0.785        
cufflinks 1.045        
cufflinks 0.851        
cufflinks 1.063        
cufflinks 1.447       High
cufflinks 1.16        
cufflinks 0.344       Low
cufflinks 0.842        

0 Strain