Gene : Seita.5G369800 S. italica v2.2
Defline:  (1 of 1) PTHR12210//PTHR12210:SF68 - NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED Genomic Order:  3698
Name:  ? Seita.5G369800 Secondary Identifier:  ? PAC:32684081
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G369800 0.5kb upstream 0.5kb upstream 4233 true scaffold_5: 40653216-40657448 Setaria italica
Seita.5G369800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 40656949-40657448 Setaria italica
Seita.5G369800 0.5kb downstream 0.5kb downstream 4233 true scaffold_5: 40652716-40656948 Setaria italica
Seita.5G369800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 40652716-40653215 Setaria italica
Seita.5G369800 1.0kb upstream 1.0kb upstream 4733 true scaffold_5: 40653216-40657948 Setaria italica
Seita.5G369800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 40656949-40657948 Setaria italica
Seita.5G369800 1.0kb downstream 1.0kb downstream 4733 true scaffold_5: 40652216-40656948 Setaria italica
Seita.5G369800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 40652216-40653215 Setaria italica
Seita.5G369800 2.0kb upstream 2.0kb upstream 5733 true scaffold_5: 40653216-40658948 Setaria italica
Seita.5G369800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 40656949-40658948 Setaria italica
Seita.5G369800 2.0kb downstream 2.0kb downstream 5733 true scaffold_5: 40651216-40656948 Setaria italica
Seita.5G369800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 40651216-40653215 Setaria italica
Seita.5G369800 5.0kb upstream 5.0kb upstream 8733 true scaffold_5: 40653216-40661948 Setaria italica
Seita.5G369800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 40656949-40661948 Setaria italica
Seita.5G369800 5.0kb downstream 5.0kb downstream 8733 true scaffold_5: 40648216-40656948 Setaria italica
Seita.5G369800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 40648216-40653215 Setaria italica
Seita.5G369800 10.0kb upstream 10.0kb upstream 13733 true scaffold_5: 40653216-40666948 Setaria italica
Seita.5G369800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 40656949-40666948 Setaria italica
Seita.5G369800 10.0kb downstream 10.0kb downstream 13733 true scaffold_5: 40643216-40656948 Setaria italica
Seita.5G369800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 40643216-40653215 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183215 5267 Panicoideae View MSA
124578665 5269 Grass View MSA
122050524 5273 Angiosperm View MSA
123429149 5275 Viridiplantae View MSA
121311967 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.056        
cufflinks 8.852       Low
cufflinks 17.556     High High
cufflinks 16.571     High High
cufflinks 10.888     High  
cufflinks 9.009       Low
cufflinks 11.715        
cufflinks 12.683        
cufflinks 6.079       Low
cufflinks 11.632        
cufflinks 9.125       Low
cufflinks 14.763     High  
cufflinks 15.092     High  
cufflinks 13.724     High  
cufflinks 16.844     High High
cufflinks 12.9     High  
cufflinks 16.906     High High
cufflinks 9.197       Low
cufflinks 14.699     High  
cufflinks 14.515     High  

0 Strain