Gene : Seita.5G387000 S. italica v2.2
Defline:  (1 of 1) PF07014 - Hs1pro-1 protein C-terminus (Hs1pro-1_C) Genomic Order:  3870
Name:  ? Seita.5G387000 Secondary Identifier:  ? PAC:32685129
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G387000 0.5kb upstream 0.5kb upstream 2505 true scaffold_5: 41835511-41838015 Setaria italica
Seita.5G387000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41837516-41838015 Setaria italica
Seita.5G387000 0.5kb downstream 0.5kb downstream 2505 true scaffold_5: 41835011-41837515 Setaria italica
Seita.5G387000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41835011-41835510 Setaria italica
Seita.5G387000 1.0kb upstream 1.0kb upstream 3005 true scaffold_5: 41835511-41838515 Setaria italica
Seita.5G387000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41837516-41838515 Setaria italica
Seita.5G387000 1.0kb downstream 1.0kb downstream 3005 true scaffold_5: 41834511-41837515 Setaria italica
Seita.5G387000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41834511-41835510 Setaria italica
Seita.5G387000 2.0kb upstream 2.0kb upstream 4005 true scaffold_5: 41835511-41839515 Setaria italica
Seita.5G387000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41837516-41839515 Setaria italica
Seita.5G387000 2.0kb downstream 2.0kb downstream 4005 true scaffold_5: 41833511-41837515 Setaria italica
Seita.5G387000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41833511-41835510 Setaria italica
Seita.5G387000 5.0kb upstream 5.0kb upstream 7005 true scaffold_5: 41835511-41842515 Setaria italica
Seita.5G387000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41837516-41842515 Setaria italica
Seita.5G387000 5.0kb downstream 5.0kb downstream 7005 true scaffold_5: 41830511-41837515 Setaria italica
Seita.5G387000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41830511-41835510 Setaria italica
Seita.5G387000 10.0kb upstream 10.0kb upstream 12005 true scaffold_5: 41835511-41847515 Setaria italica
Seita.5G387000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41837516-41847515 Setaria italica
Seita.5G387000 10.0kb downstream 10.0kb downstream 12005 true scaffold_5: 41825511-41837515 Setaria italica
Seita.5G387000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41825511-41835510 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180548 5267 Panicoideae View MSA
124579616 5269 Grass View MSA
122043569 5273 Angiosperm View MSA
121344481 5274 Embryophyte View MSA
123380055 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.631     High High
cufflinks 0.375       Low
cufflinks 2.671        
cufflinks 9.183        
cufflinks 11.635     High  
cufflinks 0.28       Low
cufflinks 3.791        
cufflinks 3.673        
cufflinks 9.664        
cufflinks 25.92     High  
cufflinks 13.514     High  
cufflinks 58.82     High High
cufflinks 28.467     High  
cufflinks 9.899        
cufflinks 7.555        
cufflinks 6.799        
cufflinks 12.228        
cufflinks 60.558     High High
cufflinks 7.333        
cufflinks 7.865        

0 Strain