Gene : Seita.5G385400 S. italica v2.2
Defline:  (1 of 47) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  3854
Name:  ? Seita.5G385400 Secondary Identifier:  ? PAC:32683021
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G385400 0.5kb upstream 0.5kb upstream 4636 true scaffold_5: 41724063-41728698 Setaria italica
Seita.5G385400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41724063-41724562 Setaria italica
Seita.5G385400 0.5kb downstream 0.5kb downstream 4636 true scaffold_5: 41724563-41729198 Setaria italica
Seita.5G385400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41728699-41729198 Setaria italica
Seita.5G385400 1.0kb upstream 1.0kb upstream 5136 true scaffold_5: 41723563-41728698 Setaria italica
Seita.5G385400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41723563-41724562 Setaria italica
Seita.5G385400 1.0kb downstream 1.0kb downstream 5136 true scaffold_5: 41724563-41729698 Setaria italica
Seita.5G385400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41728699-41729698 Setaria italica
Seita.5G385400 2.0kb upstream 2.0kb upstream 6136 true scaffold_5: 41722563-41728698 Setaria italica
Seita.5G385400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41722563-41724562 Setaria italica
Seita.5G385400 2.0kb downstream 2.0kb downstream 6136 true scaffold_5: 41724563-41730698 Setaria italica
Seita.5G385400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41728699-41730698 Setaria italica
Seita.5G385400 5.0kb upstream 5.0kb upstream 9136 true scaffold_5: 41719563-41728698 Setaria italica
Seita.5G385400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41719563-41724562 Setaria italica
Seita.5G385400 5.0kb downstream 5.0kb downstream 9136 true scaffold_5: 41724563-41733698 Setaria italica
Seita.5G385400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41728699-41733698 Setaria italica
Seita.5G385400 10.0kb upstream 10.0kb upstream 14136 true scaffold_5: 41714563-41728698 Setaria italica
Seita.5G385400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41714563-41724562 Setaria italica
Seita.5G385400 10.0kb downstream 10.0kb downstream 14136 true scaffold_5: 41724563-41738698 Setaria italica
Seita.5G385400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41728699-41738698 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
122182107 5267 Panicoideae View MSA
124578544 5269 Grass View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.761        
cufflinks 2.042       High
cufflinks 0.558        
cufflinks 0.314       Low
cufflinks 0.339       Low
cufflinks 1.747       High
cufflinks 0.753        
cufflinks 0.923        
cufflinks 1.197        
cufflinks 0.526        
cufflinks 1.013        
cufflinks 1.327        
cufflinks 0.533        
cufflinks 1.294        
cufflinks 1.087        
cufflinks 0.944        
cufflinks 1.507        
cufflinks 0.682        
cufflinks 0.201       Low
cufflinks 1.473        

0 Strain