Gene : Seita.5G388000 S. italica v2.2
Defline:  (1 of 1) PTHR11119:SF28 - NUCLEOBASE-ASCORBATE TRANSPORTER 12 Genomic Order:  3880
Name:  ? Seita.5G388000 Secondary Identifier:  ? PAC:32684304
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G388000 0.5kb upstream 0.5kb upstream 5521 true scaffold_5: 41927316-41932836 Setaria italica
Seita.5G388000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41927316-41927815 Setaria italica
Seita.5G388000 0.5kb downstream 0.5kb downstream 5521 true scaffold_5: 41927816-41933336 Setaria italica
Seita.5G388000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41932837-41933336 Setaria italica
Seita.5G388000 1.0kb upstream 1.0kb upstream 6021 true scaffold_5: 41926816-41932836 Setaria italica
Seita.5G388000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41926816-41927815 Setaria italica
Seita.5G388000 1.0kb downstream 1.0kb downstream 6021 true scaffold_5: 41927816-41933836 Setaria italica
Seita.5G388000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41932837-41933836 Setaria italica
Seita.5G388000 2.0kb upstream 2.0kb upstream 7021 true scaffold_5: 41925816-41932836 Setaria italica
Seita.5G388000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41925816-41927815 Setaria italica
Seita.5G388000 2.0kb downstream 2.0kb downstream 7021 true scaffold_5: 41927816-41934836 Setaria italica
Seita.5G388000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41932837-41934836 Setaria italica
Seita.5G388000 5.0kb upstream 5.0kb upstream 10021 true scaffold_5: 41922816-41932836 Setaria italica
Seita.5G388000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41922816-41927815 Setaria italica
Seita.5G388000 5.0kb downstream 5.0kb downstream 10021 true scaffold_5: 41927816-41937836 Setaria italica
Seita.5G388000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41932837-41937836 Setaria italica
Seita.5G388000 10.0kb upstream 10.0kb upstream 15021 true scaffold_5: 41917816-41932836 Setaria italica
Seita.5G388000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41917816-41927815 Setaria italica
Seita.5G388000 10.0kb downstream 10.0kb downstream 15021 true scaffold_5: 41927816-41942836 Setaria italica
Seita.5G388000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41932837-41942836 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188297 5267 Panicoideae View MSA
124581413 5269 Grass View MSA
122046196 5273 Angiosperm View MSA
121347942 5274 Embryophyte View MSA
123428829 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.079        
cufflinks 3.814        
cufflinks 3.482        
cufflinks 2.112        
cufflinks 3.413        
cufflinks 3.552        
cufflinks 5.352       High
cufflinks 1.944        
cufflinks 4.968        
cufflinks 2.518        
cufflinks 2.535        
cufflinks 1.035       Low
cufflinks 0.967       Low
cufflinks 1.979        
cufflinks 1.4       Low
cufflinks 8.768       High
cufflinks 1.226       Low
cufflinks 5.296       High
cufflinks 4.411        
cufflinks 1.414       Low

0 Strain