Gene : Seita.5G391000 S. italica v2.2
Defline:  (1 of 1) PTHR10555:SF122 - SORTING NEXIN 1 Genomic Order:  3910
Name:  ? Seita.5G391000 Secondary Identifier:  ? PAC:32685542
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G391000 0.5kb upstream 0.5kb upstream 4735 true scaffold_5: 42113353-42118087 Setaria italica
Seita.5G391000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42117588-42118087 Setaria italica
Seita.5G391000 0.5kb downstream 0.5kb downstream 4735 true scaffold_5: 42112853-42117587 Setaria italica
Seita.5G391000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42112853-42113352 Setaria italica
Seita.5G391000 1.0kb upstream 1.0kb upstream 5235 true scaffold_5: 42113353-42118587 Setaria italica
Seita.5G391000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42117588-42118587 Setaria italica
Seita.5G391000 1.0kb downstream 1.0kb downstream 5235 true scaffold_5: 42112353-42117587 Setaria italica
Seita.5G391000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42112353-42113352 Setaria italica
Seita.5G391000 2.0kb upstream 2.0kb upstream 6235 true scaffold_5: 42113353-42119587 Setaria italica
Seita.5G391000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42117588-42119587 Setaria italica
Seita.5G391000 2.0kb downstream 2.0kb downstream 6235 true scaffold_5: 42111353-42117587 Setaria italica
Seita.5G391000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42111353-42113352 Setaria italica
Seita.5G391000 5.0kb upstream 5.0kb upstream 9235 true scaffold_5: 42113353-42122587 Setaria italica
Seita.5G391000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42117588-42122587 Setaria italica
Seita.5G391000 5.0kb downstream 5.0kb downstream 9235 true scaffold_5: 42108353-42117587 Setaria italica
Seita.5G391000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42108353-42113352 Setaria italica
Seita.5G391000 10.0kb upstream 10.0kb upstream 14235 true scaffold_5: 42113353-42127587 Setaria italica
Seita.5G391000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42117588-42127587 Setaria italica
Seita.5G391000 10.0kb downstream 10.0kb downstream 14235 true scaffold_5: 42103353-42117587 Setaria italica
Seita.5G391000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42103353-42113352 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196092 5267 Panicoideae View MSA
124577955 5269 Grass View MSA
122045293 5273 Angiosperm View MSA
121345603 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.863        
cufflinks 14.764     High High
cufflinks 11.239     High  
cufflinks 9.569        
cufflinks 8.933       Low
cufflinks 13.843     High  
cufflinks 10.262        
cufflinks 12.793        
cufflinks 10.585        
cufflinks 6.882       Low
cufflinks 10.864        
cufflinks 14.414     High  
cufflinks 11.637        
cufflinks 13.6        
cufflinks 14.448     High  
cufflinks 10.585        
cufflinks 17.231     High High
cufflinks 11.417     High  
cufflinks 10.611        
cufflinks 15.617     High High

0 Strain