Gene : Seita.5G393700 S. italica v2.2
Defline:  (1 of 4) K10752 - histone-binding protein RBBP4 Genomic Order:  3937
Name:  ? Seita.5G393700 Secondary Identifier:  ? PAC:32684073
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G393700 0.5kb upstream 0.5kb upstream 5425 true scaffold_5: 42306188-42311612 Setaria italica
Seita.5G393700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42306188-42306687 Setaria italica
Seita.5G393700 0.5kb downstream 0.5kb downstream 5425 true scaffold_5: 42306688-42312112 Setaria italica
Seita.5G393700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42311613-42312112 Setaria italica
Seita.5G393700 1.0kb upstream 1.0kb upstream 5925 true scaffold_5: 42305688-42311612 Setaria italica
Seita.5G393700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42305688-42306687 Setaria italica
Seita.5G393700 1.0kb downstream 1.0kb downstream 5925 true scaffold_5: 42306688-42312612 Setaria italica
Seita.5G393700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42311613-42312612 Setaria italica
Seita.5G393700 2.0kb upstream 2.0kb upstream 6925 true scaffold_5: 42304688-42311612 Setaria italica
Seita.5G393700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42304688-42306687 Setaria italica
Seita.5G393700 2.0kb downstream 2.0kb downstream 6925 true scaffold_5: 42306688-42313612 Setaria italica
Seita.5G393700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42311613-42313612 Setaria italica
Seita.5G393700 5.0kb upstream 5.0kb upstream 9925 true scaffold_5: 42301688-42311612 Setaria italica
Seita.5G393700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42301688-42306687 Setaria italica
Seita.5G393700 5.0kb downstream 5.0kb downstream 9925 true scaffold_5: 42306688-42316612 Setaria italica
Seita.5G393700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42311613-42316612 Setaria italica
Seita.5G393700 10.0kb upstream 10.0kb upstream 14925 true scaffold_5: 42296688-42311612 Setaria italica
Seita.5G393700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42296688-42306687 Setaria italica
Seita.5G393700 10.0kb downstream 10.0kb downstream 14925 true scaffold_5: 42306688-42321612 Setaria italica
Seita.5G393700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42311613-42321612 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178149 5267 Panicoideae View MSA
124576324 5269 Grass View MSA
122048198 5273 Angiosperm View MSA
121348221 5274 Embryophyte View MSA
123425836 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.702        
cufflinks 3.776        
cufflinks 4.052       High
cufflinks 3.665        
cufflinks 2.709        
cufflinks 4.788       High
cufflinks 2.755        
cufflinks 3.104        
cufflinks 4.725       High
cufflinks 2.141       Low
cufflinks 1.831       Low
cufflinks 2.266        
cufflinks 2.794        
cufflinks 4.969       High
cufflinks 1.958       Low
cufflinks 2.705        
cufflinks 3.144        
cufflinks 2.872        
cufflinks 2.506        
cufflinks 2.664        

0 Strain