Gene : Seita.5G468700 S. italica v2.2
Defline:  (1 of 4) PTHR21717:SF9 - PROTEIN TBF1 Genomic Order:  4687
Name:  ? Seita.5G468700 Secondary Identifier:  ? PAC:32684089
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G468700 0.5kb upstream 0.5kb upstream 5584 true scaffold_5: 47122117-47127700 Setaria italica
Seita.5G468700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 47122117-47122616 Setaria italica
Seita.5G468700 0.5kb downstream 0.5kb downstream 5584 true scaffold_5: 47122617-47128200 Setaria italica
Seita.5G468700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 47127701-47128200 Setaria italica
Seita.5G468700 1.0kb upstream 1.0kb upstream 6084 true scaffold_5: 47121617-47127700 Setaria italica
Seita.5G468700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 47121617-47122616 Setaria italica
Seita.5G468700 1.0kb downstream 1.0kb downstream 6084 true scaffold_5: 47122617-47128700 Setaria italica
Seita.5G468700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 47127701-47128700 Setaria italica
Seita.5G468700 2.0kb upstream 2.0kb upstream 7084 true scaffold_5: 47120617-47127700 Setaria italica
Seita.5G468700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 47120617-47122616 Setaria italica
Seita.5G468700 2.0kb downstream 2.0kb downstream 7084 true scaffold_5: 47122617-47129700 Setaria italica
Seita.5G468700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 47127701-47129700 Setaria italica
Seita.5G468700 5.0kb upstream 5.0kb upstream 10084 true scaffold_5: 47117617-47127700 Setaria italica
Seita.5G468700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 47117617-47122616 Setaria italica
Seita.5G468700 5.0kb downstream 5.0kb downstream 10084 true scaffold_5: 47122617-47132700 Setaria italica
Seita.5G468700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 47127701-47132700 Setaria italica
Seita.5G468700 10.0kb upstream 10.0kb upstream 15084 true scaffold_5: 47112617-47127700 Setaria italica
Seita.5G468700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 47112617-47122616 Setaria italica
Seita.5G468700 10.0kb downstream 10.0kb downstream 15084 true scaffold_5: 47122617-47137700 Setaria italica
Seita.5G468700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 47127701-47137700 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116314 5267 Panicoideae View MSA
124590088 5269 Grass View MSA
122049318 5273 Angiosperm View MSA
123429070 5275 Viridiplantae View MSA
121348439 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.794        
cufflinks 3.747       High
cufflinks 1.12        
cufflinks 0.469       Low
cufflinks 0.35       Low
cufflinks 3.701       High
cufflinks 1.014        
cufflinks 0.714        
cufflinks 1.149        
cufflinks 0.69        
cufflinks 1.627        
cufflinks 1.238        
cufflinks 1.461        
cufflinks 1.993        
cufflinks 1.424        
cufflinks 1.095        
cufflinks 0.83        
cufflinks 0.97        
cufflinks 0.432       Low
cufflinks 1.316        

0 Strain