Gene : Seita.5G469100 S. italica v2.2
Defline:  (1 of 1) PTHR30544:SF6 - RADICAL SAM DOMAIN-CONTAINING PROTEIN Genomic Order:  4691
Name:  ? Seita.5G469100 Secondary Identifier:  ? PAC:32686284
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G469100 0.5kb upstream 0.5kb upstream 3494 true scaffold_5: 47140010-47143503 Setaria italica
Seita.5G469100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 47143004-47143503 Setaria italica
Seita.5G469100 0.5kb downstream 0.5kb downstream 3494 true scaffold_5: 47139510-47143003 Setaria italica
Seita.5G469100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 47139510-47140009 Setaria italica
Seita.5G469100 1.0kb upstream 1.0kb upstream 3994 true scaffold_5: 47140010-47144003 Setaria italica
Seita.5G469100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 47143004-47144003 Setaria italica
Seita.5G469100 1.0kb downstream 1.0kb downstream 3994 true scaffold_5: 47139010-47143003 Setaria italica
Seita.5G469100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 47139010-47140009 Setaria italica
Seita.5G469100 2.0kb upstream 2.0kb upstream 4994 true scaffold_5: 47140010-47145003 Setaria italica
Seita.5G469100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 47143004-47145003 Setaria italica
Seita.5G469100 2.0kb downstream 2.0kb downstream 4994 true scaffold_5: 47138010-47143003 Setaria italica
Seita.5G469100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 47138010-47140009 Setaria italica
Seita.5G469100 5.0kb upstream 5.0kb upstream 7994 true scaffold_5: 47140010-47148003 Setaria italica
Seita.5G469100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 47143004-47148003 Setaria italica
Seita.5G469100 5.0kb downstream 5.0kb downstream 7994 true scaffold_5: 47135010-47143003 Setaria italica
Seita.5G469100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 47135010-47140009 Setaria italica
Seita.5G469100 10.0kb upstream 10.0kb upstream 12994 true scaffold_5: 47140010-47153003 Setaria italica
Seita.5G469100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 47143004-47153003 Setaria italica
Seita.5G469100 10.0kb downstream 10.0kb downstream 12994 true scaffold_5: 47130010-47143003 Setaria italica
Seita.5G469100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 47130010-47140009 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175331 5267 Panicoideae View MSA
124576335 5269 Grass View MSA
122048523 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121344688 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.918     High  
cufflinks 20.726     High  
cufflinks 66.471     High High
cufflinks 57.301     High High
cufflinks 51.994     High High
cufflinks 27.31     High  
cufflinks 27.821     High  
cufflinks 53.423     High High
cufflinks 67.815     High High
cufflinks 17.184     High  
cufflinks 15.054     High  
cufflinks 11.097       Low
cufflinks 13.676     High  
cufflinks 53.318     High High
cufflinks 10.157       Low
cufflinks 25.199     High  
cufflinks 12.261       Low
cufflinks 21.177     High  
cufflinks 29.159     High  
cufflinks 11.09       Low

0 Strain