Gene : Seita.6G021900 S. italica v2.2
Defline:  (1 of 3) 2.7.7.14 - Ethanolamine-phosphate cytidylyltransferase / Phosphorylethanolamine transferase Genomic Order:  219
Name:  ? Seita.6G021900 Secondary Identifier:  ? PAC:32699340
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY4FS-6 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G021900 0.5kb upstream 0.5kb upstream 4972 true scaffold_6: 1569032-1574003 Setaria italica
Seita.6G021900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1573504-1574003 Setaria italica
Seita.6G021900 0.5kb downstream 0.5kb downstream 4972 true scaffold_6: 1568532-1573503 Setaria italica
Seita.6G021900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1568532-1569031 Setaria italica
Seita.6G021900 1.0kb upstream 1.0kb upstream 5472 true scaffold_6: 1569032-1574503 Setaria italica
Seita.6G021900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1573504-1574503 Setaria italica
Seita.6G021900 1.0kb downstream 1.0kb downstream 5472 true scaffold_6: 1568032-1573503 Setaria italica
Seita.6G021900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1568032-1569031 Setaria italica
Seita.6G021900 2.0kb upstream 2.0kb upstream 6472 true scaffold_6: 1569032-1575503 Setaria italica
Seita.6G021900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1573504-1575503 Setaria italica
Seita.6G021900 2.0kb downstream 2.0kb downstream 6472 true scaffold_6: 1567032-1573503 Setaria italica
Seita.6G021900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1567032-1569031 Setaria italica
Seita.6G021900 5.0kb upstream 5.0kb upstream 9472 true scaffold_6: 1569032-1578503 Setaria italica
Seita.6G021900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1573504-1578503 Setaria italica
Seita.6G021900 5.0kb downstream 5.0kb downstream 9472 true scaffold_6: 1564032-1573503 Setaria italica
Seita.6G021900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1564032-1569031 Setaria italica
Seita.6G021900 10.0kb upstream 10.0kb upstream 14472 true scaffold_6: 1569032-1583503 Setaria italica
Seita.6G021900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1573504-1583503 Setaria italica
Seita.6G021900 10.0kb downstream 10.0kb downstream 14472 true scaffold_6: 1559032-1573503 Setaria italica
Seita.6G021900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1559032-1569031 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176545 5267 Panicoideae View MSA
124568937 5269 Grass View MSA
122041937 5273 Angiosperm View MSA
121349404 5274 Embryophyte View MSA
123426391 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.778     High  
cufflinks 12.311        
cufflinks 6.721       Low
cufflinks 7.151       Low
cufflinks 11.212     High  
cufflinks 15.054     High  
cufflinks 13.072        
cufflinks 14.682     High  
cufflinks 14.331     High  
cufflinks 7.55       Low
cufflinks 13.842     High  
cufflinks 13.109        
cufflinks 14.74     High  
cufflinks 12.41        
cufflinks 11.539        
cufflinks 15.905     High  
cufflinks 10.588        
cufflinks 23.957     High High
cufflinks 11.877     High  
cufflinks 11.398        

0 Strain