Gene : Seita.6G023400 S. italica v2.2
Defline:  (1 of 2) PTHR12706:SF13 - RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING PROTEIN Genomic Order:  234
Name:  ? Seita.6G023400 Secondary Identifier:  ? PAC:32698881
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G023400 0.5kb upstream 0.5kb upstream 16708 true scaffold_6: 1670931-1687638 Setaria italica
Seita.6G023400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1687139-1687638 Setaria italica
Seita.6G023400 0.5kb downstream 0.5kb downstream 16708 true scaffold_6: 1670431-1687138 Setaria italica
Seita.6G023400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1670431-1670930 Setaria italica
Seita.6G023400 1.0kb upstream 1.0kb upstream 17208 true scaffold_6: 1670931-1688138 Setaria italica
Seita.6G023400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1687139-1688138 Setaria italica
Seita.6G023400 1.0kb downstream 1.0kb downstream 17208 true scaffold_6: 1669931-1687138 Setaria italica
Seita.6G023400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1669931-1670930 Setaria italica
Seita.6G023400 2.0kb upstream 2.0kb upstream 18208 true scaffold_6: 1670931-1689138 Setaria italica
Seita.6G023400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1687139-1689138 Setaria italica
Seita.6G023400 2.0kb downstream 2.0kb downstream 18208 true scaffold_6: 1668931-1687138 Setaria italica
Seita.6G023400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1668931-1670930 Setaria italica
Seita.6G023400 5.0kb upstream 5.0kb upstream 21208 true scaffold_6: 1670931-1692138 Setaria italica
Seita.6G023400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1687139-1692138 Setaria italica
Seita.6G023400 5.0kb downstream 5.0kb downstream 21208 true scaffold_6: 1665931-1687138 Setaria italica
Seita.6G023400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1665931-1670930 Setaria italica
Seita.6G023400 10.0kb upstream 10.0kb upstream 26208 true scaffold_6: 1670931-1697138 Setaria italica
Seita.6G023400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1687139-1697138 Setaria italica
Seita.6G023400 10.0kb downstream 10.0kb downstream 26208 true scaffold_6: 1660931-1687138 Setaria italica
Seita.6G023400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1660931-1670930 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193951 5267 Panicoideae View MSA
124585427 5269 Grass View MSA
122045253 5273 Angiosperm View MSA
121344716 5274 Embryophyte View MSA
123424908 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.739       High
cufflinks 3.233       High
cufflinks 1.663        
cufflinks 1.348       Low
cufflinks 1.419        
cufflinks 2.954        
cufflinks 2.397        
cufflinks 1.722        
cufflinks 1.629        
cufflinks 1.987        
cufflinks 3.332       High
cufflinks 1.866        
cufflinks 1.399        
cufflinks 1.619        
cufflinks 2.106        
cufflinks 3.559       High
cufflinks 1.801        
cufflinks 4.874       High
cufflinks 1.013       Low
cufflinks 1.753        

0 Strain