Gene : Seita.6G024000 S. italica v2.2
Defline:  (1 of 1) KOG3471 - RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 Genomic Order:  240
Name:  ? Seita.6G024000 Secondary Identifier:  ? PAC:32701021
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G024000 0.5kb upstream 0.5kb upstream 7627 true scaffold_6: 1722261-1729887 Setaria italica
Seita.6G024000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1729388-1729887 Setaria italica
Seita.6G024000 0.5kb downstream 0.5kb downstream 7627 true scaffold_6: 1721761-1729387 Setaria italica
Seita.6G024000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1721761-1722260 Setaria italica
Seita.6G024000 1.0kb upstream 1.0kb upstream 8127 true scaffold_6: 1722261-1730387 Setaria italica
Seita.6G024000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1729388-1730387 Setaria italica
Seita.6G024000 1.0kb downstream 1.0kb downstream 8127 true scaffold_6: 1721261-1729387 Setaria italica
Seita.6G024000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1721261-1722260 Setaria italica
Seita.6G024000 2.0kb upstream 2.0kb upstream 9127 true scaffold_6: 1722261-1731387 Setaria italica
Seita.6G024000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1729388-1731387 Setaria italica
Seita.6G024000 2.0kb downstream 2.0kb downstream 9127 true scaffold_6: 1720261-1729387 Setaria italica
Seita.6G024000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1720261-1722260 Setaria italica
Seita.6G024000 5.0kb upstream 5.0kb upstream 12127 true scaffold_6: 1722261-1734387 Setaria italica
Seita.6G024000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1729388-1734387 Setaria italica
Seita.6G024000 5.0kb downstream 5.0kb downstream 12127 true scaffold_6: 1717261-1729387 Setaria italica
Seita.6G024000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1717261-1722260 Setaria italica
Seita.6G024000 10.0kb upstream 10.0kb upstream 17127 true scaffold_6: 1722261-1739387 Setaria italica
Seita.6G024000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1729388-1739387 Setaria italica
Seita.6G024000 10.0kb downstream 10.0kb downstream 17127 true scaffold_6: 1712261-1729387 Setaria italica
Seita.6G024000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1712261-1722260 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182623 5267 Panicoideae View MSA
124579755 5269 Grass View MSA
122042198 5273 Angiosperm View MSA
121346770 5274 Embryophyte View MSA
123427579 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.458        
cufflinks 3.46        
cufflinks 3.657        
cufflinks 3.159        
cufflinks 2.602       Low
cufflinks 3.082        
cufflinks 3.087        
cufflinks 2.911        
cufflinks 2.408       Low
cufflinks 4.325       High
cufflinks 2.583       Low
cufflinks 3.379        
cufflinks 2.858        
cufflinks 3.734       High
cufflinks 3.589        
cufflinks 3.244        
cufflinks 3.74       High
cufflinks 3.181        
cufflinks 2.963        
cufflinks 3.35        

0 Strain