Gene : Seita.6G032700 S. italica v2.2
Defline:  (1 of 135) PF02365 - No apical meristem (NAM) protein (NAM) Genomic Order:  327
Name:  ? Seita.6G032700 Secondary Identifier:  ? PAC:32700859
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G032700 0.5kb upstream 0.5kb upstream 3008 true scaffold_6: 2442444-2445451 Setaria italica
Seita.6G032700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 2444952-2445451 Setaria italica
Seita.6G032700 0.5kb downstream 0.5kb downstream 3008 true scaffold_6: 2441944-2444951 Setaria italica
Seita.6G032700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 2441944-2442443 Setaria italica
Seita.6G032700 1.0kb upstream 1.0kb upstream 3508 true scaffold_6: 2442444-2445951 Setaria italica
Seita.6G032700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 2444952-2445951 Setaria italica
Seita.6G032700 1.0kb downstream 1.0kb downstream 3508 true scaffold_6: 2441444-2444951 Setaria italica
Seita.6G032700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 2441444-2442443 Setaria italica
Seita.6G032700 2.0kb upstream 2.0kb upstream 4508 true scaffold_6: 2442444-2446951 Setaria italica
Seita.6G032700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 2444952-2446951 Setaria italica
Seita.6G032700 2.0kb downstream 2.0kb downstream 4508 true scaffold_6: 2440444-2444951 Setaria italica
Seita.6G032700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 2440444-2442443 Setaria italica
Seita.6G032700 5.0kb upstream 5.0kb upstream 7508 true scaffold_6: 2442444-2449951 Setaria italica
Seita.6G032700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 2444952-2449951 Setaria italica
Seita.6G032700 5.0kb downstream 5.0kb downstream 7508 true scaffold_6: 2437444-2444951 Setaria italica
Seita.6G032700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 2437444-2442443 Setaria italica
Seita.6G032700 10.0kb upstream 10.0kb upstream 12508 true scaffold_6: 2442444-2454951 Setaria italica
Seita.6G032700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2444952-2454951 Setaria italica
Seita.6G032700 10.0kb downstream 10.0kb downstream 12508 true scaffold_6: 2432444-2444951 Setaria italica
Seita.6G032700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 2432444-2442443 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196209 5267 Panicoideae View MSA
124576910 5269 Grass View MSA
122041899 5273 Angiosperm View MSA
121309900 5274 Embryophyte View MSA
123347534 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.92        
cufflinks 0.644       Low
cufflinks 51.157     High High
cufflinks 20.957     High  
cufflinks 7.033        
cufflinks 0.805       Low
cufflinks 18.827     High  
cufflinks 25.763     High  
cufflinks 1.391        
cufflinks 3.622        
cufflinks 3.872        
cufflinks 0.385       Low
cufflinks 2.399        
cufflinks 93.269     High High
cufflinks 1.462        
cufflinks 31.12     High High
cufflinks 0.859       Low
cufflinks 7.144        
cufflinks 31.463     High High
cufflinks 1.301        

0 Strain