Gene : Seita.6G035900 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  359
Name:  ? Seita.6G035900 Secondary Identifier:  ? PAC:32700508
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G035900 0.5kb upstream 0.5kb upstream 5397 true scaffold_6: 2709612-2715008 Setaria italica
Seita.6G035900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 2714509-2715008 Setaria italica
Seita.6G035900 0.5kb downstream 0.5kb downstream 5397 true scaffold_6: 2709112-2714508 Setaria italica
Seita.6G035900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 2709112-2709611 Setaria italica
Seita.6G035900 1.0kb upstream 1.0kb upstream 5897 true scaffold_6: 2709612-2715508 Setaria italica
Seita.6G035900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 2714509-2715508 Setaria italica
Seita.6G035900 1.0kb downstream 1.0kb downstream 5897 true scaffold_6: 2708612-2714508 Setaria italica
Seita.6G035900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 2708612-2709611 Setaria italica
Seita.6G035900 2.0kb upstream 2.0kb upstream 6897 true scaffold_6: 2709612-2716508 Setaria italica
Seita.6G035900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 2714509-2716508 Setaria italica
Seita.6G035900 2.0kb downstream 2.0kb downstream 6897 true scaffold_6: 2707612-2714508 Setaria italica
Seita.6G035900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 2707612-2709611 Setaria italica
Seita.6G035900 5.0kb upstream 5.0kb upstream 9897 true scaffold_6: 2709612-2719508 Setaria italica
Seita.6G035900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 2714509-2719508 Setaria italica
Seita.6G035900 5.0kb downstream 5.0kb downstream 9897 true scaffold_6: 2704612-2714508 Setaria italica
Seita.6G035900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 2704612-2709611 Setaria italica
Seita.6G035900 10.0kb upstream 10.0kb upstream 14897 true scaffold_6: 2709612-2724508 Setaria italica
Seita.6G035900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2714509-2724508 Setaria italica
Seita.6G035900 10.0kb downstream 10.0kb downstream 14897 true scaffold_6: 2699612-2714508 Setaria italica
Seita.6G035900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 2699612-2709611 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180824 5267 Panicoideae View MSA
124572611 5269 Grass View MSA
122045308 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346704 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.825     High  
cufflinks 16.271     High  
cufflinks 300.125     High High
cufflinks 261.483     High High
cufflinks 186.952     High High
cufflinks 28.007     High  
cufflinks 19.762     High  
cufflinks 48.222     High  
cufflinks 143.658     High High
cufflinks 2.616       Low
cufflinks 10.128        
cufflinks 3.285       Low
cufflinks 8.209        
cufflinks 53.138     High  
cufflinks 2.716       Low
cufflinks 23.571     High  
cufflinks 4.085       Low
cufflinks 12.695     High  
cufflinks 141.986     High High
cufflinks 2.831       Low

0 Strain