Gene : Seita.5G437100 S. italica v2.2
Defline:  (1 of 4) PTHR11062:SF105 - BETA-1,4-XYLOSYLTRANSFERASE IRX10-RELATED Genomic Order:  4371
Name:  ? Seita.5G437100 Secondary Identifier:  ? PAC:32680655
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5980 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G437100 0.5kb upstream 0.5kb upstream 4553 true scaffold_5: 45401360-45405912 Setaria italica
Seita.5G437100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 45405413-45405912 Setaria italica
Seita.5G437100 0.5kb downstream 0.5kb downstream 4553 true scaffold_5: 45400860-45405412 Setaria italica
Seita.5G437100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 45400860-45401359 Setaria italica
Seita.5G437100 1.0kb upstream 1.0kb upstream 5053 true scaffold_5: 45401360-45406412 Setaria italica
Seita.5G437100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 45405413-45406412 Setaria italica
Seita.5G437100 1.0kb downstream 1.0kb downstream 5053 true scaffold_5: 45400360-45405412 Setaria italica
Seita.5G437100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 45400360-45401359 Setaria italica
Seita.5G437100 2.0kb upstream 2.0kb upstream 6053 true scaffold_5: 45401360-45407412 Setaria italica
Seita.5G437100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 45405413-45407412 Setaria italica
Seita.5G437100 2.0kb downstream 2.0kb downstream 6053 true scaffold_5: 45399360-45405412 Setaria italica
Seita.5G437100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 45399360-45401359 Setaria italica
Seita.5G437100 5.0kb upstream 5.0kb upstream 9053 true scaffold_5: 45401360-45410412 Setaria italica
Seita.5G437100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 45405413-45410412 Setaria italica
Seita.5G437100 5.0kb downstream 5.0kb downstream 9053 true scaffold_5: 45396360-45405412 Setaria italica
Seita.5G437100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 45396360-45401359 Setaria italica
Seita.5G437100 10.0kb upstream 10.0kb upstream 14053 true scaffold_5: 45401360-45415412 Setaria italica
Seita.5G437100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 45405413-45415412 Setaria italica
Seita.5G437100 10.0kb downstream 10.0kb downstream 14053 true scaffold_5: 45391360-45405412 Setaria italica
Seita.5G437100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 45391360-45401359 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993246 5273 Angiosperm View MSA
122190236 5267 Panicoideae View MSA
124576376 5269 Grass View MSA
121263540 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.137        
cufflinks 4.784        
cufflinks 0.14       Low
cufflinks 0.267       Low
cufflinks 1.089        
cufflinks 4.825        
cufflinks 4.224        
cufflinks 2.968        
cufflinks 2.972        
cufflinks 4.664        
cufflinks 3.979        
cufflinks 2.366        
cufflinks 4.611        
cufflinks 0.183       Low
cufflinks 4.75        
cufflinks 3.228        
cufflinks 3.713        
cufflinks 0.971        
cufflinks 0.178       Low
cufflinks 6.014        

0 Strain